Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2533 248 3e-63 seq520 168 2e-39 seq2333 111 5e-22 seq2221 77.0 1e-11 >seq2533 Length=312810 Score = 248 bits (274), Expect = 3e-63 Identities = 177/202 (88%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||||||||||||| | ||| | |||| ||||||||||||| Sbjct 208593 CTCCCACTTATTCTGCACCTCTCAAGTCTCTCAACAGCACCAGACTGGAGTCAAGCTCAA 208652 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || | Sbjct 208653 CAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCCTTCCCTTGGCTGTGGTTTCACTGG 208712 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || | || | |||||||||||||||||||| |||||||||| | | |||||||||||||| Sbjct 208713 ATGGCAGGTGGGGACAGTGGGAATCTCGTTCATCCATTCATACACATCACTAATTAGATG 208772 Query 417 ACGAGGCATTTGGCTACCTTAA 438 ||||| |||||||||| ||||| Sbjct 208773 ACGAGACATTTGGCTA-CTTAA 208793 >seq520 Length=5038 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 214 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 155 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 154 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 114 >seq2333 Length=629237 Score = 111 bits (122), Expect = 5e-22 Identities = 86/102 (84%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||| || |||| ||| ||| || || |||| |||| |||||||||||||||| Sbjct 375903 CTTAAGGGACTCATTGTT---CCCACCATTCACCCATGCTTCACTGAATTTCTTCACTTT 375959 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||| |||||||||||||||||| |||||||||||||||| Sbjct 375960 GACATTGAGAGCACTGGGCAGAAATAACATTGCGTCAACATC 376001 >seq2221 Length=9094402 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||| || || || |||||| | | ||| || ||| | ||||||||||| Sbjct 3514717 CTTAAGAGAATCCTAAGTCACTCCCACTATCTACT-GCACTTCATCACGTTTCTTCACTT 3514659 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| ||| | |||| |||||||||||| |||||| Sbjct 3514658 TGACATTCAGGGCAATAGGCAAAAATCACATTGCATCAACA 3514618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635150715072