Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2533 248 3e-63
seq520 168 2e-39
seq2333 111 5e-22
seq2221 77.0 1e-11
>seq2533
Length=312810
Score = 248 bits (274), Expect = 3e-63
Identities = 177/202 (88%), Gaps = 1/202 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||| ||||||||||||| | ||| | |||| |||||||||||||
Sbjct 208593 CTCCCACTTATTCTGCACCTCTCAAGTCTCTCAACAGCACCAGACTGGAGTCAAGCTCAA 208652
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |
Sbjct 208653 CAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCCTTCCCTTGGCTGTGGTTTCACTGG 208712
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|| | || | |||||||||||||||||||| |||||||||| | | ||||||||||||||
Sbjct 208713 ATGGCAGGTGGGGACAGTGGGAATCTCGTTCATCCATTCATACACATCACTAATTAGATG 208772
Query 417 ACGAGGCATTTGGCTACCTTAA 438
||||| |||||||||| |||||
Sbjct 208773 ACGAGACATTTGGCTA-CTTAA 208793
>seq520
Length=5038
Score = 168 bits (186), Expect = 2e-39
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 214 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 155
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||||
Sbjct 154 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 114
>seq2333
Length=629237
Score = 111 bits (122), Expect = 5e-22
Identities = 86/102 (84%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
|||||| || |||| ||| ||| || || |||| |||| ||||||||||||||||
Sbjct 375903 CTTAAGGGACTCATTGTT---CCCACCATTCACCCATGCTTCACTGAATTTCTTCACTTT 375959
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||| |||||||||||||||||| ||||||||||||||||
Sbjct 375960 GACATTGAGAGCACTGGGCAGAAATAACATTGCGTCAACATC 376001
>seq2221
Length=9094402
Score = 77.0 bits (84), Expect = 1e-11
Identities = 79/101 (78%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||| || || || |||||| | | ||| || ||| | |||||||||||
Sbjct 3514717 CTTAAGAGAATCCTAAGTCACTCCCACTATCTACT-GCACTTCATCACGTTTCTTCACTT 3514659
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||| ||| | |||| |||||||||||| ||||||
Sbjct 3514658 TGACATTCAGGGCAATAGGCAAAAATCACATTGCATCAACA 3514618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635150715072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |