Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 107 2e-18
seq890 95.1 1e-14
seq334 93.3 3e-14
>seq2246
Length=973789
Score = 107 bits (118), Expect = 2e-18
Identities = 123/162 (76%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| || || || || ||||||||||| || ||||| |||||||||| ||||| ||
Sbjct 490307 GGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 490366
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| | ||||| | |||||||| | |||||| || ||||| ||||| ||
Sbjct 490367 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTG 490426
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|||||| |||||||| | || ||||| || | |||||||||
Sbjct 490427 GGACTCGATGATGGCATACC--AGAGCTGCTGGGCCTTCACC 490466
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| |||||||| || |||| || || | ||||| ||||| || |
Sbjct 491567 CATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTGCTCTTCTTT 491626
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || |||||| ||||||||||||||||| ||||| || |||||||
Sbjct 491627 CCCTGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 491685
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 491686 AGATGGCAAA--AGCCC 491700
>seq890
Length=1787418
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| | | || || || |||||||| ||||| ||||
Sbjct 1677420 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGA 1677361
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||| |||||||| ||||| ||||||||||| | ||||| || || |||||||
Sbjct 1677360 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 1677304
>seq334
Length=7684865
Score = 93.3 bits (102), Expect = 3e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||| | | || || ||||||||||| ||||||||||
Sbjct 6127770 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 6127711
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|||||||||| ||| | || || || ||||||||| |||| || || || ||||| | ||
Sbjct 6127710 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGG 6127651
Query 61376 A 61376
|
Sbjct 6127650 A 6127650
Score = 87.8 bits (96), Expect = 1e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101
||||| || || || ||||| | ||||||||| |||| | || || |||| ||||||
Sbjct 6128559 GAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 6128500
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| ||||| || || ||||||||||||| |||||||||
Sbjct 6128499 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 6128462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397553396084960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |