Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2246 107 2e-18 seq890 95.1 1e-14 seq334 93.3 3e-14 >seq2246 Length=973789 Score = 107 bits (118), Expect = 2e-18 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| || || || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 490307 GGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 490366 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | |||||||| | |||||| || ||||| ||||| || Sbjct 490367 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTG 490426 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||| | || ||||| || | ||||||||| Sbjct 490427 GGACTCGATGATGGCATACC--AGAGCTGCTGGGCCTTCACC 490466 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || |||| || || | ||||| ||||| || | Sbjct 491567 CATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTGCTCTTCTTT 491626 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 491627 CCCTGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 491685 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 491686 AGATGGCAAA--AGCCC 491700 >seq890 Length=1787418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || || |||||||| ||||| |||| Sbjct 1677420 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGA 1677361 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| ||||||||||| | ||||| || || ||||||| Sbjct 1677360 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 1677304 >seq334 Length=7684865 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 6127770 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 6127711 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| | || Sbjct 6127710 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGG 6127651 Query 61376 A 61376 | Sbjct 6127650 A 6127650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 6128559 GAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 6128500 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 6128499 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 6128462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553396084960