Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2534 98.7 4e-15 >seq2534 Length=279983 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | |||| |||||| || ||||||||||||| || || || ||||||| Sbjct 56361 CTCCTTGAGGCGCGGCACGCCCAGCGTGACGTTCTTGGCCGACACCCCCGCGTAGTGGAA 56420 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||||||| |||||||| | | |||| | || || ||| || Sbjct 56421 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCGCCCAGGGACTGCGCGGCCAGAGCGCCCAC 56480 Query 349204 CATCTCGCCGGG 349215 ||| || ||||| Sbjct 56481 CATTTCCCCGGG 56492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084656730323172