Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq40916 260 5e-65 seq23847 91.5 5e-14 >seq40916 Length=507 Score = 260 bits (288), Expect = 5e-65 Identities = 304/410 (74%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 54066 GAAGTGGTCTACGCTGATGGCAACGAAGTACCTTATCGTTGCTCTTTGCATCCGCAATGC 54125 || ||||| ||||| || ||||| | | |||| | ||||| | ||||| ||| Sbjct 83 GAGGTGGTGTACGCCGACGGCAATCAGCTCTCTTACTGCTGCTCGATCAATCCGGCCTGC 142 Query 54126 AAACTGGGGTCGACGCTGGTAATTCCGTTGCGTGGTGAAAATCAGCGGGTGATGGGCACC 54185 || ||||| ||||||||||| || ||| |||| || ||||| |||||||| || |||||| Sbjct 143 AAGCTGGGATCGACGCTGGTGATCCCGCTGCGCGGCGAAAACCAGCGGGTCATCGGCACC 202 Query 54186 ATCAAATTGTATGAAGCCAAAAACCGTTTATTTAGTTCAATCAACCGCACGCTGGGCGAG 54245 ||||| |||| ||| | |||| || | || || | |||||||||||||||||||| Sbjct 203 ATCAAGCTGTACGAACCGAAAAGCCAGCTGTTCAGCACCATCAACCGCACGCTGGGCGAA 262 Query 54246 GGGATTGCGCAACTGCTTTCGGCGCAGATCCTCGCCGGGCAATATGAGCGGCAAAAAGCG 54305 || ||||| ||||| |||||||||||| | ||||| || || ||||| || || | Sbjct 263 GGCATTGCCAGCCTGCTGTCGGCGCAGATCATGGCCGGACAGTACGAGCGCCACAAGCAG 322 Query 54306 ATGCTCACCCAGTCAGAGATCAAACTGCTTCACGCCCAGGTGAACCCCCATTTTTTGTTT 54365 |||| | ||||| |||||||| ||| | || || ||||| || || ||||| |||| Sbjct 323 CTGCTGGCGCAGTCGGAGATCAAGCTGTTGCATGCGCAGGTCAATCCGCATTTCCTGTTC 382 Query 54366 AATGCGCTTAACACCATTAAAGCGGTGATCCGTCGCGACAGCGAACAGGCCAGCCAGCTG 54425 |||||| | || || | ||||||||||| ||||| |||||| |||| || | ||| Sbjct 383 AATGCGTTGAATACGCTGGTGGCGGTGATCCGCCGCGATGGCGAACGGGCCTGCGATCTG 442 Query 54426 GTGCAGTATCTTTCCACTTTTTTCCGCAAAAACTTAAAGCGGCCTTCGGA 54475 ||||||| || || ||||| || || |||||| | || || |||||| Sbjct 443 GTGCAGTCCCTCTCAACTTTCTTTCGTAAAAACCTCAAACG---TTCGGA 489 >seq23847 Length=8263 Score = 91.5 bits (100), Expect = 5e-14 Identities = 207/308 (67%), Gaps = 14/308 (5%) Strand=Plus/Minus Query 3274 ACGTGAAGTAATCCCCAGCCAGGTGGTAAATCCTCAATTGAAATAATTCCCGGCTCACTA 3333 |||| || ||||||||||| || | ||||| || || | ||||| || | Sbjct 1781 ACGTTCAGCAATCCCCAGCCTTCAGGCAGCTCCTCGATGCGGATCAGCCCCGGTTCGCAG 1722 Query 3334 ATAAAGAATCGCCAGTCGCCCATTCCAAGAGACGGATTTTTACGAAAACGCTTTTTTCTA 3393 || ||||| ||||| || ||||| || || || | | || || |||||||| | Sbjct 1721 ATGAAGAAGCGCCAATCCCCCATACCGAGCTCAGGTTGAATGCGGAACCGCTTTTTCCGG 1662 Query 3394 TCTGCCAACAAGTCAGCACGAGAACATTTCGC--CAATCAGGCATGATGCTGAATTTCTG 3451 ||||| | |||||| | || || || || || | |||||||| || || ||| | | Sbjct 1661 TCTGCAAGGAAGTCACCGCGTGAGCACTTGGCTTCGATCAGGCAGGAGGCCAGATTACGG 1602 Query 3452 AATCCCATAGCATCTGGCTGTTCTCCGGTACTGGTTACA---GCTATAAAGCGGTCATGA 3508 || || || || || |||||||| |||| ||| ||| || | |||||| ||||| Sbjct 1601 AAGCCGATTGCGTCAGGCTGTTCGCCGG---TGGAGACAGCGGCAACAAAGCGATCATGG 1545 Query 3509 AAACAAACCTTGAAACCG---TTGCGCTTAAGGAACTTGTACGCAATCTGACAGAGTTCG 3565 ||| ||| ||||||| |||||| |||||| | |||||| | || ||| || Sbjct 1544 AAAGCGACCGAGAAACCGTTATTGCGC---AGGAACCGCTCGGCAATCAGGCATAGTGCG 1488 Query 3566 CGGTGTGT 3573 | ||| || Sbjct 1487 CTGTGCGT 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175063460279256