Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq139399 172 1e-38 seq183296 120 8e-23 seq201347 102 2e-17 seq166816 102 2e-17 seq38063 95.1 3e-15 seq29732 93.3 1e-14 seq180546 91.5 4e-14 >seq139399 Length=451 Score = 172 bits (190), Expect = 1e-38 Identities = 265/375 (71%), Gaps = 5/375 (1%) Strand=Plus/Plus Query 22499 TGCTACGACGGTCAGTATTTCTTCGATACCGACCACCCCGTCATCAAGCCGGGCGGCGGC 22558 |||| |||||| ||||| |||||||| || || ||||| ||| |||| || | Sbjct 56 TGCTTCGACGGCCAGTACTTCTTCGACACGGATCACCCTGTCGGACAGCCCGGTAAGGAA 115 Query 22559 ACCACCTCCGTGTCCAACTTCCAGGGGGGCACCGGTCCCGCCTGGTTCCTGTTGGATACC 22618 || | ||| ||||||||| || ||||| || | |||||||||||| |||| || Sbjct 116 GTCAGC---GTGAGCAACTTCCAAGGCGGCACGGGCGCAGCCTGGTTCCTGGTGGACACG 172 Query 22619 ACGCGCATGGTCAAGCCGATGATTCACCAGGTGCGCAAGCCGTACACCTTCGTGTCCATG 22678 || || |||||||||| || ||||| ||| || ||| ||||| | ||| | Sbjct 173 ACCAAAGTGATCAAGCCGATCATCTACCAGCGTCGCCGCCCCTACGCCTTCCAGGCCA-G 231 Query 22679 GACAAGGAGGAC-GACGAAAACGTGTTCAACCGCAAGGAATTCATCTACGGCGTGGACGC 22737 ||| || ||| ||||| ||||| ||||||||||| || ||| ||| || | || | Sbjct 232 GACGAGCCTGACCGACGACAACGTCTTCAACCGCAACGAGTTCGTCTGGGGTGCAGATGG 291 Query 22738 CCGGTCGAACGTCGGCTTTGGGCTTTGGCAACTGGCCTACGCCAGCCGCGAACCGCTGGA 22797 ||| |||||||||| ||| || |||||||||||||| || | ||| ||||| Sbjct 292 CCGCAGCAACGTCGGCTATGGCCTGTGGCAACTGGCCTATGCGTCCAAGGAAGGCCTGGA 351 Query 22798 CTCGCAGGCGTTCAACGATGCCTACGCACAGATGCGGTCCGTCAAGGGCGACAACGGCAA 22857 | |||||||| | ||||||| ||| ||||| | | |||| |||||||||||| Sbjct 352 CCTGCAGGCGTACTCCGATGCCCGCGCCTCGATGCAGAGCCAGAAGGCCGACAACGGCAA 411 Query 22858 GGCGCTGGGCATCCG 22872 | |||||| ||||| Sbjct 412 GCCGCTGGTGATCCG 426 >seq183296 Length=258 Score = 120 bits (132), Expect = 8e-23 Identities = 183/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 22277 TTCCGTGAATGGATCGGTGACCGCGTCGTCCAGAACCTGGCGACGTCGGATTTCACGATC 22336 ||||| || ||| | ||||| || ||| ||||||||| | ||||| | | ||||| Sbjct 7 TTCCGCGAGTGGCTGGGTGAACGGGTCTATCAGAACCTGAAGCAATCGGACTACTCGATC 66 Query 22337 AAGAACAAGCCGTGGGAAAACACC--GTCGG-CGTCAACAAGGAAACCATCGAGGACGAC 22393 ||||||||| | |||||||||||| ||||| || | | | || |||||||| ||| Sbjct 67 AAGAACAAGACCTGGGAAAACACCGTGTCGGTCGGCCGCGATGA---GATCGAGGATGAC 123 Query 22394 AGCTACGGCGTCTACAAACCGATCATCGCGCAGATGGGGCAGGACGC--CAAAGAACATC 22451 |||||||| ||||| || ||||| |||| |||| |||||||| | | | || | Sbjct 124 CAATACGGCGTGTACAAGCCCGTCATCCAGCAGCTGGGCCAGGACGCGGCGACG--CACC 181 Query 22452 CCGATGAGCTGGTGTGGGGCCTGTGGAAGCAAGGCTTCAACGCTGTTTGCTACGACGGTC 22511 |||||||||| || | | || | || |||||| | | ||||| |||||| | Sbjct 182 CCGATGAGCTCGTCTTCGAACTCCTGCAGGCGGGCTTCTCCACGCGTTGCTTCGACGGCC 241 Query 22512 AGTATTTCTTCGATAC 22527 |||| |||||||| || Sbjct 242 AGTACTTCTTCGACAC 257 >seq201347 Length=207 Score = 102 bits (112), Expect = 2e-17 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 9108 CGAGGAGTACGGCGTCCAGCGCGGCGGCAGCAAAGGCAACGTGACCCTCCACAGCTTCGA 9167 |||| ||||||||| | || ||||||| ||| |||||||| | ||| | || ||| Sbjct 6 CGAGCAGTACGGCGCCAAGATCGGCGGCGACAAGGGCAACGTCAGCCTGTATTCCTACGA 65 Query 9168 CGGCCGTTACAAGGTCCGACTGGCCCATGCC--GACACCATGAAGTTTGACGAGCGTCTG 9225 ||||| | |||| ||| | ||| |||| |||||||| |||| || ||||| ||| Sbjct 66 TGGCCGCTTCAAGATCCTGCGCGCC--TGCCAGGACACCATCCAGTTCGATGAGCGCCTG 123 Query 9226 CAGGCCGCCAAGACCATCATTGACGACCTGATGACCGAGTGGACAGAGGGATCGCGCCCC 9285 |||||||||||| || |||| || || ||| ||| ||||| || || || ||| || Sbjct 124 CAGGCCGCCAAGGCCCTCATCGATGAGTGCCTGAACGACTGGACCGAAGGCTCACGCGCC 183 Query 9286 GA 9287 || Sbjct 184 GA 185 >seq166816 Length=478 Score = 102 bits (112), Expect = 2e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 21928 GCCGACCAGATCACGCTGGCCGACGTAGGCGCAAACGCCTACATCGTCGATGACCAGACC 21987 ||||||| ||||| |||||||| | || || || |||||||||||| |||||||| Sbjct 65 GCCGACCTCATCACCCTGGCCGATATCGGTGCCGACTGCTACATCGTCGACGACCAGACG 124 Query 21988 GTGGCCAAGACCGACGGCGGCAACGCCCGCTCGGTCGCCGGCAAGGTCCGCGACGTCGAC 22047 |||||||||||| ||| |||| ||||| || || |||||||| ||| || ||| Sbjct 125 GTGGCCAAGACCTCGGGCACCAACACCCGCAGTGTGGCTGGCAAGGTGTTCGATGTGGAC 184 Query 22048 ACCCAAGGCGTCTGGATCG 22066 || | ||||||||| ||| Sbjct 185 GCCGACGGCGTCTGGGTCG 203 >seq38063 Length=1017 Score = 95.1 bits (104), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 16806 AACGTCCTGCACCTGCGCGACCACT-CGCCGGACGGGGCTGAGCTGATCCCGTTTGGCTG 16864 |||| |||| |||||||||| || ||||| | || | ||| ||||||||||| Sbjct 766 AACGAGCTGCGCCTGCGCGACAACAGCGCCG-ATGGAGAATCGCTCTGGCCGTTTGGCTG 824 Query 16865 GATCAAGCACGTTCACAAA--GCCAAGTCGGGCTATATGGCTCGCGCCGGCCTGCACCGC 16922 ||||| |||| ||| || || ||||| || || ||| | || ||| || Sbjct 825 GATCATGCACACGCACCGCTCGCGCAGC--GGCTACATCGCCCGCACGGGTCTGTTTCGG 882 Query 16923 GTGCTGGCCTGGCCGTACCTGTTCAAGACCTACGCGGTGCGCGACCTGGCCGAGCTGCTG 16982 || || |||||||||| || ||||||| || || |||||||||||||| ||| | ||| Sbjct 883 GTACTCGCCTGGCCGTGGCTCTTCAAGAACTTTGCCGTGCGCGACCTGGCTGAGTTCCTG 942 Query 16983 GAGATTTACGGCATGCCCATCCGGCTGGG 17011 ||||| ||||| |||| | || ||||| Sbjct 943 GAGATCTACGGGCTGCCGCTGCGTCTGGG 971 >seq29732 Length=1354 Score = 93.3 bits (102), Expect = 1e-14 Identities = 119/160 (74%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 9340 AACACCGGCCGCGTGCTGTCGCTGCGCAGTCTGGACATCAAGGATGCGCGTTGGCAGCAG 9399 ||||| | |||||||| ||||| |||| ||||||||||| || ||||||| Sbjct 582 AACACGGCTCGCGTGCTCGGCCTGCGTCGTCTTCCCATCAAGGATGATCGCTGGCAGCGT 641 Query 9400 GCGATGACCGCGATTGGCGACAGCGTCCAGGTCGTGGGCACCA--AGAGC-TACGTGCGC 9456 || ||| ||||||| |||||||||| | ||||| || || | | | |||||||| Sbjct 642 GCCATGGCCGCGATCAGCGACAGCGT---GAGCGTGGCCAACAGCAAACCGTACGTGCGG 698 Query 9457 TTCTATGAGCGCATCGAGGGCACGGACGAGTATCAGGCCG 9496 ||||| ||||| ||||||| |||||||||| || |||| Sbjct 699 TTCTACGAGCGGCGCGAGGGCTCGGACGAGTA-CACGCCG 737 >seq180546 Length=222 Score = 91.5 bits (100), Expect = 4e-14 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21966 CTACATCGTCGATGACCAGACCGTGGCCAAGACCGACGGCGGCAACGCCCGCTCGGTCGC 22025 |||||||||||| |||||||| |||||||||||| ||| |||| ||||| || || Sbjct 220 CTACATCGTCGACGACCAGACGGTGGCCAAGACCTCGGGCACCAACACCCGCAGCGTGGC 161 Query 22026 CGGCAAGGTCCGCGACGTCGACACCCAAGGCGTCTGGATC 22065 ||||||||| |||||| ||| || | ||||||||| || Sbjct 160 CGGCAAGGTGTTCGACGTGGACGCCGACGGCGTCTGGGTC 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133721320064196