Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq9657 178 2e-42 seq9660 161 1e-37 seq23381 123 4e-26 seq25188 100 4e-19 >seq9657 Length=1201 Score = 178 bits (196), Expect = 2e-42 Identities = 183/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 1189 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1132 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 1131 CTCGTTCACGGGGAAGAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 1072 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || | ||| ||||||||||||||||||| Sbjct 1071 ACCCGCGCCTGCCGGCGGAGGGTAGGCACAAGCTGAGCCAGTCAGTGTAGCGCGCGTGCG 1012 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1011 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 959 >seq9660 Length=1139 Score = 161 bits (178), Expect = 1e-37 Identities = 174/225 (77%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 |||||||| || ||||||||||||| ||||| ||| |||||| |||||| ||||||| | Sbjct 1 GCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTCAC 58 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACC 128 | || ||||||||| | ||||||||||||| ||||| | ||||||| || Sbjct 59 GGGGAAGAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCC 118 Query 129 TGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAAC 188 || |||| ||| | || | ||| ||||||||||||||||||||||| | || Sbjct 119 TGCCGGCGGAGGGTAGGCACAAGCTGAGCCAGTCAGTGTAGCGCGCGTGCGGCCCCGGAC 178 Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||||||| ||||| || ||||| Sbjct 179 ATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 222 >seq23381 Length=1557 Score = 123 bits (136), Expect = 4e-26 Identities = 143/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 46 CTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 |||||| |||||| ||||||| | | || ||||||||| | ||||||||||||| Sbjct 2 CTTACTGGGAATT-CCTCGTTCACGGGGAAGAATTGCAATCCCCGATCCCCATCACGAAT 60 Query 106 AAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164 ||||| | ||||||| |||| |||| ||| | || | ||| |||| Sbjct 61 GGGGTTCAACGGGTTACCCGCGCCTGCCGGCGGAGGGTAGGCACAAGCTGAGCCAGTCAG 120 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| | Sbjct 121 TGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC 179 Query 225 TTCCGTGGC 233 | ||||| Sbjct 180 TCGGGTGGC 188 >seq25188 Length=24126677 Score = 100 bits (110), Expect = 4e-19 Identities = 168/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || ||| |||||||||| | |||| | |||||| ||||| ||| | |||| |||||| | Sbjct 19822953 GTGCAATGGGCAGGGACTAAATCAATGTGAGCTT-ATGACCCGCACCTACTGGGAATT-C 19822896 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | || |||||| | |||| ||||||| || | |||| | || Sbjct 19822895 CTTGTTCACAGGGAAGTATTGCAGTCCCCTATACCCATCATGAATGGAGTTCATTGGGTT 19822836 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 ||| | |||| ||| ||| ||| | | | ||| |||||||||| | ||| Sbjct 19822835 ACCTGCGCCTGCTGGCGGAGGG--TAGGCCCAAGCTGATCTAGTCAGTGTAGCATGTGTG 19822778 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||| | ||||||||||||| |||||||||||||||| ||||| ||| ||||| Sbjct 19822777 TGGCCCTGGACATCTAAGGGCAACACAGACCTGTTATTG-CTCAATCTTGGGTGGC 19822723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751816330580