Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01-
02] 25,212 sequences; 1,117,373,619 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq24458 127 9e-27
seq25168 87.8 7e-15
seq25189 86.0 3e-14
seq25129 82.4 3e-13
>seq24458
Length=12585
Score = 127 bits (140), Expect = 9e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 11052 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 10993
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 10992 ACGGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 10933
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 10932 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 10893
>seq25168
Length=10409267
Score = 87.8 bits (96), Expect = 7e-15
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||||| || | |||| | ||||||||||||| ||||||| |||| |||
Sbjct 1734033 GAGCATGAGCATCTGTGCTAGGACTCAAAAGATGGTGAACCATGCCTGGGGAGGGCAAAG 1734092
Query 609 CCAGAGGAAACTC--TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666
||||||||||||| ||||| | | | ||| || ||| | ||||||||| || |||||
Sbjct 1734093 CCAGAGGAAACTCTTTGGTGAAAGTCCTTAGCAGTCCTGACATGCAAATCGGTCATCAAA 1734152
Query 667 TTTGGGTATAGGGGCGA 683
||| |||||| ||
Sbjct 1734153 CCAAGGTCTAGGGGTGA 1734169
>seq25189
Length=23285226
Score = 86.0 bits (94), Expect = 3e-14
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | || |||| |||||| | | ||||| | |||||
Sbjct 9836368 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGATAAAT 9836309
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156
| || ||||| |||||| |||||| | | | ||||| ||||||| ||||||
Sbjct 9836308 ACCAGCATGAGACTGATAGCCAGCAAGTACAATAAGAGAAAGTTGAAAAGAACTTTG 9836252
>seq25129
Length=1129190
Score = 82.4 bits (90), Expect = 3e-13
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | | || ||||||||||||| | || ||| |||||| | ||||| |||||||
Sbjct 783036 GAGTTGGGCTGCTTGGGAATGCAGCCCAAAGAGGGTGGTAAACCCCATCTAAGGCTAAAT 782977
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || |||||| ||| | ||||||| | ||||| | ||||| |||||| ||
Sbjct 782976 AACAGCACGAGACCAATAACCAACAAGTACTAGAAGGGAAAGGTAAAAAGAACTTTGAAA 782917
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||| | || || |||||||
Sbjct 782916 AGAGAGCTCAAGAGAGCGTGAAA 782894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079459202600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |