Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24458 127 9e-27 seq25168 87.8 7e-15 seq25189 86.0 3e-14 seq25129 82.4 3e-13 >seq24458 Length=12585 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 11052 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 10993 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 10992 ACGGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 10933 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 10932 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 10893 >seq25168 Length=10409267 Score = 87.8 bits (96), Expect = 7e-15 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||||| || | |||| | ||||||||||||| ||||||| |||| ||| Sbjct 1734033 GAGCATGAGCATCTGTGCTAGGACTCAAAAGATGGTGAACCATGCCTGGGGAGGGCAAAG 1734092 Query 609 CCAGAGGAAACTC--TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 ||||||||||||| ||||| | | | ||| || ||| | ||||||||| || ||||| Sbjct 1734093 CCAGAGGAAACTCTTTGGTGAAAGTCCTTAGCAGTCCTGACATGCAAATCGGTCATCAAA 1734152 Query 667 TTTGGGTATAGGGGCGA 683 ||| |||||| || Sbjct 1734153 CCAAGGTCTAGGGGTGA 1734169 >seq25189 Length=23285226 Score = 86.0 bits (94), Expect = 3e-14 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || |||| |||||| | | ||||| | ||||| Sbjct 9836368 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGATAAAT 9836309 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | || ||||| |||||| |||||| | | | ||||| ||||||| |||||| Sbjct 9836308 ACCAGCATGAGACTGATAGCCAGCAAGTACAATAAGAGAAAGTTGAAAAGAACTTTG 9836252 >seq25129 Length=1129190 Score = 82.4 bits (90), Expect = 3e-13 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | | || ||||||||||||| | || ||| |||||| | ||||| ||||||| Sbjct 783036 GAGTTGGGCTGCTTGGGAATGCAGCCCAAAGAGGGTGGTAAACCCCATCTAAGGCTAAAT 782977 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||| ||| | ||||||| | ||||| | ||||| |||||| || Sbjct 782976 AACAGCACGAGACCAATAACCAACAAGTACTAGAAGGGAAAGGTAAAAAGAACTTTGAAA 782917 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||| | || || ||||||| Sbjct 782916 AGAGAGCTCAAGAGAGCGTGAAA 782894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079459202600