Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9657 197 3e-48 seq9660 183 6e-44 seq23381 136 7e-30 seq25188 113 9e-23 >seq9657 Length=1201 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 933 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 990 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||||||||||||||||||||||| | || | || | | Sbjct 991 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGACTGGCTCAGCTTGTGCCTAC 1050 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1051 CCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1110 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 1111 CAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 1170 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1171 AAGTCCCTGCCCTTTGTA 1188 >seq9660 Length=1139 Score = 183 bits (202), Expect = 6e-44 Identities = 193/250 (77%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 248 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 191 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||||||||||||||||||||||| | || | || | | Sbjct 190 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGACTGGCTCAGCTTGTGCCTAC 131 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 130 CCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 71 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 70 CAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 11 Query 311 ACGTCCCTGC 320 | |||||||| Sbjct 10 AAGTCCCTGC 1 >seq23381 Length=1557 Score = 136 bits (150), Expect = 7e-30 Identities = 139/180 (77%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 180 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTAC 122 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || | || | | ||| ||||| ||| |||||| | | || | Sbjct 121 ACTGACTGGCTCAGCTTGTGCCTACCCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCC 62 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | ||||||||| || | | | |||||||||| || |||||| Sbjct 61 CATTCGTGATGGGGATCGGGGATTGCAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAG 2 >seq25188 Length=24126677 Score = 113 bits (124), Expect = 9e-23 Identities = 183/257 (71%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 19822697 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 19822754 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC-AGAGCCAACGAGTTCATC 189 ||||||||||||| | ||||| ||| | ||||||||||| ||| || | | | | Sbjct 19822755 TTGCCCTTAGATGTCCAGGGCCACACACATGCTACACTGACTAGA-TCAGCTTGGGCCTA 19822813 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| | ||| ||||| | | || | || || |||| |||| | | | Sbjct 19822814 CCCTCCGCCAGCAGGCGCAGGTAACCCAATGAACTCCATTCATGATGGGTATAGGGGACT 19822873 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||| || | | ||| |||||| || |||| | ||| ||||| ||| | | ||||| Sbjct 19822874 GCAATACTTCCCTGTGAACAAGGAATTCCCAGTAGGTGCGGGTCATAAGCTCACATTGAT 19822933 Query 310 TACGTCCCTGCCCTTTG 326 | |||||||||| ||| Sbjct 19822934 TTAGTCCCTGCCCATTG 19822950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946961191936