Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Merops_20nubicus_20[refseq_20GCF_5F000691845.1_202014-05-16] 53,499 sequences; 1,062,961,556 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq36225 116 3e-21 seq26544 95.1 1e-14 seq43608 91.5 1e-13 >seq36225 Length=28417 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || |||||||| || || ||||| |||||||||| ||||| || Sbjct 9958 GGTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 9899 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| | |||||||| | |||||| || ||||||||||| || Sbjct 9898 GTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCGGTCTCGGTCTG 9839 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||| |||||||||| ||| || Sbjct 9838 CGACTCGATGATGGCGTACCAGAG 9815 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || || ||||| ||||| || | Sbjct 8174 CATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCGGGCTCGCTGCTCTTCTTT 8115 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| ||||||||||||||||| |||||| || |||| || Sbjct 8114 CCCAGTG-TTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAGATGCCACGGCTCCAAGT 8056 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 8055 AGATGGCAAA--AGCCC 8041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 65689 TCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748 ||| | ||||||||| |||| |||||||| || | ||| | ||||||||||||| || Sbjct 13030 TCCTTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAAAGCGCCGTAATAAATGGTCTCAAA 12971 Query 65749 AATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAA 65807 ||| | | | | ||| | ||||||| |||||| | || | | ||| |||| | Sbjct 12970 AATCTGCTGGTTCAAGCGC-TGTGCCTCGGGGCTCTCAAAGGGGAACCTCATGAGGATGA 12912 Query 65808 AAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTC 65867 | | ||||||||| || || || || || |||||||| || || ||| ||||| || | Sbjct 12911 AGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGGCGGTGCCGCCTGTTGGAGCG-C 12853 Query 65868 TCG 65870 ||| Sbjct 12852 TCG 12850 >seq26544 Length=14703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 11952 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCACGTTGTTTCTATGGCTTTCAGA 11893 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 11892 TTCTCATCGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 11836 >seq43608 Length=19049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || || || || ||||| | ||||||||| |||| | ||||| |||| |||||| Sbjct 20 GACAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGATATCTGGCAGATGTAC 79 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || |||||||||||||||| ||||||||| Sbjct 80 AAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || ||||||||||| || ||||||| Sbjct 821 TGGAGCGCTTCAGTCAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGTTTCCAGA 880 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | || || || ||||||||| |||| || || || ||||| Sbjct 881 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397308778085360