Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq16995 315 3e-83 seq7543 298 2e-78 seq5145 255 2e-65 seq120 86.0 3e-14 seq616 75.2 5e-11 >seq16995 Length=534 Score = 315 bits (348), Expect = 3e-83 Identities = 335/435 (77%), Gaps = 13/435 (3%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 429 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 370 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 369 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 310 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 309 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 250 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT--CGGCCGGTGCACTCTTCTGCG 260 | | ||| || ||| | | || ||| || | | | || || Sbjct 249 TTGATCGGACATG--GTGTTTTGTGCCCTCTGCTCCTTGTGGGTAGGGGAATC-TCGCAT 193 Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 ||| |||||||||||| | || || ||||||| || ||||||| || | | Sbjct 192 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAA-TCCATAGGAATGTAGCTTGCCT 134 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG--CTCC 375 ||| || |||||||| | | ||||| | ||| || ||||||||| | ||| | Sbjct 133 CGGTAAGTATTATAGCCTGTG--GGAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 76 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 | | ||||||||||| |||||||| || || |||||||||| |||||||||||||||||| Sbjct 75 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 16 Query 436 TAACATCTATGCGAG 450 |||| |||||||||| Sbjct 15 TAACGTCTATGCGAG 1 >seq7543 Length=223 Score = 298 bits (330), Expect = 2e-78 Identities = 189/202 (94%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 484 GTGAACGGAGGTGGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGA 541 ||||||| |||| || || || || ||||||| ||||||||||||||||||||||||| Sbjct 223 GTGAACGTAGGTTGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGA 164 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 104 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 || |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 103 GGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCG 44 Query 662 TCAAATTTGGGTATAGGGGCGA 683 || ||||||||||||||||||| Sbjct 43 TCGAATTTGGGTATAGGGGCGA 22 >seq5145 Length=201 Score = 255 bits (282), Expect = 2e-65 Identities = 179/203 (88%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 |||||| |||||||| ||||||| || |||||||||||||||| | |||||||| || Sbjct 201 GCGAGTTTTTGGGTGGCAAACCCATGAGCGTAATGAAAGTGAATGCAGGTGGGATCCGC- 143 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 | || ||||||||||||| |||||||| |||||||| | || ||||||||||| || Sbjct 142 -AAGGAGCACCATCGACCGGCCCTGATGTTCTCGGATGGGTCTGCGTAAGAGCATATATG 84 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 83 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGT 24 Query 626 GGAGGCTCGCAGCGGTTCTGGCG 648 |||||||||||||||||||| || Sbjct 23 GGAGGCTCGCAGCGGTTCTGACG 1 >seq120 Length=4789148 Score = 86.0 bits (94), Expect = 3e-14 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || |||| |||||| | | ||||| | ||||| Sbjct 490389 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGTTAAAT 490448 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| ||||| ||||| |||||||| | | ||||| |||||| | |||| Sbjct 490449 ACTGGCACAAGACCAATAGCCCACAAGTACCATAAGGGAAAGCTGAAAAAAAGTTTG 490505 >seq616 Length=1558222 Score = 75.2 bits (82), Expect = 5e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||| ||| ||||| ||| ||||||||||||||||| | ||||||||||| | || Sbjct 133385 AGATGATGAGCTATGGCTGGGCAGGGTGAAGCCAGAGGACATTCTGGTGGAGGTCTGTAG 133444 Query 638 CGGTTCTGGCGTGCAAATCGATCGTC 663 | || ||| |||||||| | ||||| Sbjct 133445 CAGTCCTGATGTGCAAATTGGTCGTC 133470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079409631650