Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq13388 219 7e-55 seq5559 100 5e-19 >seq13388 Length=27585 Score = 219 bits (242), Expect = 7e-55 Identities = 202/252 (80%), Gaps = 18/252 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | |||||| | |||||||||||||||||||||||||||||| || Sbjct 17374 GTCAGTGTAGCGCACACACGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 17316 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| |||||| | |||| | ||||| ||||||||| | | ||||| | || Sbjct 17315 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCCCTAAGAAGCTGGACGCCAAC--TGCTC 17259 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| ||||| || ||||||||||||||||||||||||| | Sbjct 17258 G--GGGGTCGCATAACTAGTTAGCCAGT----CTCTCGTTCGTTATCGGAATTAACCACA 17205 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 17204 CAAGTCACTCCACCAACTAAGAACGGCCATGCAACACCACCCACGGAATCAAGAAAGAGC 17145 Query 247 TATCAATCTGTC 258 | ||| |||||| Sbjct 17144 TCTCACTCTGTC 17133 >seq5559 Length=29073 Score = 100 bits (110), Expect = 5e-19 Identities = 150/209 (72%), Gaps = 12/209 (6%) Strand=Plus/Plus Query 53 CATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAA 111 ||||||||||||||| |||| || | || ||| | |||| | |||| | |||||| || Sbjct 514 CATCACAGACCTGTTGTTGC-TCTACCT--CATGTTGCTGAATGCCACTTGTCCCTTGAA 570 Query 112 GAAGCCAGCCACCAACCATAGTCGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTC 167 ||| | || |||||| | | | | ||| |||||| | | || | ||| Sbjct 571 GAATTTGGACATCAACCACTGAGGGAGCGCATAACTAGTTAGCATGCCACAGTATTGTTT 630 Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||| |||| ||||||||||||||||| | || ||||| ||| | |||||| |||| Sbjct 631 GTTAATGGAAATAACCAGACAAATCACTGC----ACAAAGAATGGCAAGGCACCATCACC 686 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTG 256 | | |||| |||||||||| |||||||| Sbjct 687 CGTGGAATTTAGAAAGAGCTCTCAATCTG 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794743936284