Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq135185 168 1e-39 seq589 111 3e-22 seq14754 86.0 1e-14 seq2960 86.0 1e-14 seq11573 78.8 2e-12 >seq135185 Length=253 Score = 168 bits (186), Expect = 1e-39 Identities = 95/96 (99%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAA 60 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||||| Sbjct 61 GGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 96 >seq589 Length=1295671 Score = 111 bits (122), Expect = 3e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||||||| || | ||||||||||||||||||||||||| ||||||| |||||| Sbjct 509070 AAGGATCAAAAAGTGACATTGCTATGAACGCTTGGCTGCCACAAGTCAGTTATGCCTGTG 509129 Query 216 GTAACTTTTCTGGCACCTC 234 |||||||||||| |||||| Sbjct 509130 GTAACTTTTCTGACACCTC 509148 >seq14754 Length=17506 Score = 86.0 bits (94), Expect = 1e-14 Identities = 179/261 (69%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| || | ||| | ||||||||||||||| |||| | Sbjct 16639 TCATCAGGAGGATAAAACTAACTTGCTTAATGGCAGTCTAAACCCAGCTCGTGTTCATTG 16580 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| |||| || ||||| ||| | ||| || | | ||| ||||| |||| | Sbjct 16579 TTAACGGGTAAATCGACCAACACTT--GGCATTTTG--TGG---TGACAGGAAAAGCCCA 16527 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| || | | ||| ||| | |||| | ||||||||| || | |||| || Sbjct 16526 CATGAAAAGGT--TGAAGTAACTTTGCTAGTA---GTTGGCTGCCCCAGGGTAGTTTTCT 16472 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| | |||| || | ||| | || | | | | |||| || Sbjct 16471 CTGTGGTAACTTTTCTATCGTCTCTTGCTTAAAACCTAGAAAGTC-AGAAGATCCTGAGA 16413 Query 271 CCACACTTTCATGGTTTGTAT 291 ||||||| ||||| ||||| Sbjct 16412 CCACACTAGCATGGCCTGTAT 16392 >seq2960 Length=720689 Score = 86.0 bits (94), Expect = 1e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||| ||||||| ||||| ||| || ||||| |||||| || Sbjct 104158 ATCAGTAGGGTAAAACTAACCTACCTCATGATGGTCT-AACTCAACTCACATTCCCTGTT 104100 Query 93 AGTGGGTGAACAATCCA 109 || |||||| |||||| Sbjct 104099 AGCAGGTGAAAAATCCA 104083 >seq11573 Length=231994 Score = 78.8 bits (86), Expect = 2e-12 Identities = 56/63 (89%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||| | |||| |||||||||||||||| ||||| |||||||||||| |||||| Sbjct 15137 GTCATCAGTAAGATAAATCTAACCTGTCTCATGATGGTCT-AACCCAGCTCACATTCCCT 15195 Query 90 ATT 92 || Sbjct 15196 CTT 15198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852124185984