Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq135185 194 5e-47 seq33018 179 1e-42 seq82070 170 6e-40 seq17889 138 4e-30 seq3564 77.0 1e-11 >seq135185 Length=253 Score = 194 bits (214), Expect = 5e-47 Identities = 118/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 128 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATC 187 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 188 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 247 Query 127 GGCCC 131 |||| Sbjct 248 AGCCC 252 >seq33018 Length=19436 Score = 179 bits (198), Expect = 1e-42 Identities = 157/196 (80%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| |||||||| |||||| |||| |||||| | |||||| || |||||| Sbjct 13861 CTCCCATTTATTCTATACCTCTGAAGTATCTTCACAGCACCAGACTAGGGTTGTGCTCAA 13920 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| |||||| |||| ||||||||||||||| || | Sbjct 13921 CAGGGTCTTCTTTCCCTGCTGATTCTTTCAAGCCTGTTCTCTTGGCTGTGGTTTCACTGG 13980 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| |||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct 13981 CTAGTAAGTAGGGACAGTGG-------GTTCATCCATTCATGCATATCACTAATTGGATG 14033 Query 417 ACGAGGCATTTGGCTA 432 | |||||||||||||| Sbjct 14034 ATGAGGCATTTGGCTA 14049 >seq82070 Length=2248 Score = 170 bits (188), Expect = 6e-40 Identities = 154/193 (80%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||| |||| | | ||| |||||| | |||||||||| || |||||| Sbjct 1568 CCACTTATTCTATACCTTTTATGTCTCTTCACAGCACCAAACTAGAGTCATGCCCAACAG 1509 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 | |||||||| |||||||| ||| || ||| |||||||||||||||| || || Sbjct 1508 G---TTCTTTCCTTGCTGATTCTACCACACCTGTTTCCTTGGCTGTGGTTTCACTGGAGG 1452 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||| |||||||| | ||||||| ||| ||||||||||| | |||||||||||||||| Sbjct 1451 GTAGGTAGGGACAATAGGAATCTTGTTCATCCATTCATGTACATCACTAATTAGATGACA 1392 Query 420 AGGCATTTGGCTA 432 |||||||||| || Sbjct 1391 AGGCATTTGGTTA 1379 >seq17889 Length=88168 Score = 138 bits (152), Expect = 4e-30 Identities = 121/149 (81%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||| ||||||||||||| ||||||||| || |||| || ||||| Sbjct 55244 GAGTCAAGCTCAACAAGGTCTTCTTTCCCTGCTGATTCCACCCAGCCTCTTTGACTGGCT 55303 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||| || |||||||| |||||||||| |||||||| || | |||||| || | Sbjct 55304 GTGGTTTCACTGGATAGTAGGTAGGGACAGTAGGAATCTCATTCTTTGGTTCATGTGCAT 55363 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 ||| || ||||| ||||||||||||| Sbjct 55364 CAC--AT--CATGACAAGGCATTTGGCTA 55388 Score = 80.6 bits (88), Expect = 9e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||| |||| ||||||| |||| |||| | ||||||||||| |||||| Sbjct 55036 CTTTTGCTCTGTGGGAGGTTTCTGTCCTCCCTGAGCTCAGCTTAGGACACCCATGTTATG 55095 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACC 103 || ||| ||||| ||||||| ||||||||| ||| Sbjct 55096 CGTTGGCAGGTGTGCTGCCCCAGTCAAACTCCCAACC 55132 >seq3564 Length=109447 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 49 TAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||||||||||| |||||| ||| |||| ||| ||||||||| ||||||||| ||||| || Sbjct 70483 TAGGACACCTGTGTTATGCTTTGACAGGTGTACCGCCCCAGTCAAACTCCCTACCTGCCA 70424 Query 109 ATGTC 113 |||| Sbjct 70423 CTGTC 70419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630844415872