Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq9972 129 5e-25
seq6632 95.1 1e-14
seq16573 91.5 1e-13
>seq9972
Length=29549
Score = 129 bits (142), Expect = 5e-25
Identities = 128/162 (79%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| ||
Sbjct 11955 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 11896
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| ||
Sbjct 11895 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTG 11836
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
||||| ||||| |||| || ||||| || | |||||||||
Sbjct 11835 AGACTCGATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 11796
Score = 98.7 bits (108), Expect = 8e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || || ||||| ||||||||||| ||||||| || | ||||| ||||| || |
Sbjct 10612 CATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCTTCTTT 10553
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| ||||||||| |||||||
Sbjct 10552 TCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 10494
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 10493 AGATGGCAAA--AGCCC 10479
Score = 86.0 bits (94), Expect = 5e-12
Identities = 135/188 (72%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740
|||||| ||| | |||||||||||||| |||||||| || | || | |||||||
Sbjct 14837 TCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGTAATAAATA 14778
Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798
||||| ||||| | | | | ||| | | |||||| ||| || | || |||| ||
Sbjct 14777 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCAGGGCTTTC-AAAGGGGTACCTCA 14720
Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858
||| || |||| ||| ||||| || || || ||||| || ||||||||||| || |
Sbjct 14719 TCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 14660
Query 65859 TGGAACGT 65866
|||| |||
Sbjct 14659 TGGAGCGT 14652
>seq6632
Length=32526
Score = 95.1 bits (104), Expect = 1e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||| | | ||||| || |||||||| ||||||||||
Sbjct 7470 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAGGCTCGGTGTTTCTATGGCTTCCAGA 7529
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||||||||| ||| | || || || ||||||||| ||||||| || || |||||
Sbjct 7530 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACAT 7584
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
|| || || |||| || || || || || ||||| | ||||||||| |||| | ||
Sbjct 6640 GAGCCGCTGTTGCGGGACAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 6699
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| |||| |||||||| ||||| || || ||||||||||||| |||||||||
Sbjct 6700 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 6752
>seq16573
Length=30794
Score = 91.5 bits (100), Expect = 1e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| | | || || ||||||||||| ||||| |||||| ||| |||||
Sbjct 27860 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 27801
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||||| ||||||||||| | ||||| || || |||||||
Sbjct 27800 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 27758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396277370528960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |