Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1198 668 0.0 seq2512 86.0 3e-14 seq1379 75.2 5e-11 >seq1198 Length=1319 Score = 668 bits (740), Expect = 0.0 Identities = 556/670 (83%), Gaps = 15/670 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 683 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 624 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 623 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 564 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 563 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 504 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCG 260 | ||||| || ||| | | || ||| | | | | | ||| | Sbjct 503 TTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCAT 447 Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 ||| |||||||||||| | || || ||||||| || ||||||| || | | Sbjct 446 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCT 388 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375 ||| || |||||||| | || |||| | ||| || ||||||||| | ||| | Sbjct 387 CGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 330 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 | | ||||||||||| |||||||| || || |||||||||| |||||||||||||||||| Sbjct 329 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 270 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 |||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| |||| Sbjct 269 TAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGT 210 Query 496 GGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553 || || || || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 209 TGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 150 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 90 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| Sbjct 89 GGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGT 30 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 29 ATAGGGGCGA 20 >seq2512 Length=5690391 Score = 86.0 bits (94), Expect = 3e-14 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | | ||||| | ||||| Sbjct 1614876 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGTTAAAT 1614935 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| ||||||||||| |||||||| | | ||||| |||||| | |||| Sbjct 1614936 ACTGGCACAAGACCGATAGCCCACAAGTACCATAAGGGAAAGCTGAAAAAAAGTTTG 1614992 >seq1379 Length=1880285 Score = 75.2 bits (82), Expect = 5e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||| ||| ||||| ||| ||||||||||||||||| | ||||||||||| | || Sbjct 540887 AGATGATGAGCTATGGCTGGGCAGGGTGAAGCCAGAGGACATTCTGGTGGAGGTCTGTAG 540828 Query 638 CGGTTCTGGCGTGCAAATCGATCGTC 663 | || ||| |||||||| | ||||| Sbjct 540827 CAGTCCTGATGTGCAAATTGGTCGTC 540802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079943136050