Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06]
2,651 sequences; 1,202,994,831 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq788 168 1e-39
seq1641 107 3e-21
seq2058 86.0 1e-14
seq1873 86.0 1e-14
seq1685 73.4 7e-11
>seq788
Length=390
Score = 168 bits (186), Expect = 1e-39
Identities = 95/96 (99%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 390 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAA 331
Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||||||||||||||||||||||||||||||||||
Sbjct 330 GGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
>seq1641
Length=8005783
Score = 107 bits (118), Expect = 3e-21
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215
||||||||||||| || | ||||||||||||||||||||||||| | ||||| ||||||
Sbjct 3679284 AAGGATCAAAAAGTGACATTGCTATGAACGCTTGGCTGCCACAAGTCTGTTATGCCTGTG 3679225
Query 216 GTAACTTTTCTGGCACCTC 234
|||||||||||| ||||||
Sbjct 3679224 GTAACTTTTCTGACACCTC 3679206
>seq2058
Length=636519
Score = 86.0 bits (94), Expect = 1e-14
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||| ||||||| ||||| ||| || ||||| |||||| ||
Sbjct 196135 ATCAGTAGGGTAAAACTAACCTACCTCATGATGGTCT-AACTCAACTCACATTCCCTGTT 196077
Query 93 AGTGGGTGAACAATCCA 109
|| |||||| ||||||
Sbjct 196076 AGCAGGTGAAAAATCCA 196060
>seq1873
Length=2397019
Score = 86.0 bits (94), Expect = 1e-14
Identities = 179/261 (69%), Gaps = 13/261 (5%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||| ||| |||||||||| || | ||| | ||||||||||||||| |||| |
Sbjct 1004142 TCATCAGGAGGATAAAACTAACTTGCTTAATGGCAGTCTAAACCCAGCTCGTGTTCATTG 1004201
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||| |||| || ||||| | | | ||| || | | ||| ||||| |||| |
Sbjct 1004202 TTAACGGGTAAATCGACCAACACGT--GGCATTTTG--TGG---TGACAGGAAAAGCCCA 1004254
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| || | | ||| ||| | |||| | ||||||||| || | |||| ||
Sbjct 1004255 CATGAAAAGGT--TGAAGTAACTTTGCTAGTA---GTTGGCTGCCCCAGGGTAGTTTTCT 1004309
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
|||||||||||||||| || |||| || | ||| | || | | | | |||| ||
Sbjct 1004310 CTGTGGTAACTTTTCTATCATCTCTTGCTTAAAACCTAGAAAGTC-AGAAGATCCTGAGA 1004368
Query 271 CCACACTTTCATGGTTTGTAT 291
||||||| ||||| |||||
Sbjct 1004369 CCACACTAGCATGGCCTGTAT 1004389
>seq1685
Length=1138
Score = 73.4 bits (80), Expect = 7e-11
Identities = 55/65 (85%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||||| |||||| |||| || || ||||||||||||||||||||||||||||||
Sbjct 1074 TACTAAGTTCAATTACTATTGCGGTAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 1133
Query 61 TGACG 65
||||
Sbjct 1134 CGACG 1138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854377349856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |