Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq788 168 1e-39 seq1641 107 3e-21 seq2058 86.0 1e-14 seq1873 86.0 1e-14 seq1685 73.4 7e-11 >seq788 Length=390 Score = 168 bits (186), Expect = 1e-39 Identities = 95/96 (99%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 390 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAA 331 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||||| Sbjct 330 GGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 >seq1641 Length=8005783 Score = 107 bits (118), Expect = 3e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||||||| || | ||||||||||||||||||||||||| | ||||| |||||| Sbjct 3679284 AAGGATCAAAAAGTGACATTGCTATGAACGCTTGGCTGCCACAAGTCTGTTATGCCTGTG 3679225 Query 216 GTAACTTTTCTGGCACCTC 234 |||||||||||| |||||| Sbjct 3679224 GTAACTTTTCTGACACCTC 3679206 >seq2058 Length=636519 Score = 86.0 bits (94), Expect = 1e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||| ||||||| ||||| ||| || ||||| |||||| || Sbjct 196135 ATCAGTAGGGTAAAACTAACCTACCTCATGATGGTCT-AACTCAACTCACATTCCCTGTT 196077 Query 93 AGTGGGTGAACAATCCA 109 || |||||| |||||| Sbjct 196076 AGCAGGTGAAAAATCCA 196060 >seq1873 Length=2397019 Score = 86.0 bits (94), Expect = 1e-14 Identities = 179/261 (69%), Gaps = 13/261 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| || | ||| | ||||||||||||||| |||| | Sbjct 1004142 TCATCAGGAGGATAAAACTAACTTGCTTAATGGCAGTCTAAACCCAGCTCGTGTTCATTG 1004201 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| |||| || ||||| | | | ||| || | | ||| ||||| |||| | Sbjct 1004202 TTAACGGGTAAATCGACCAACACGT--GGCATTTTG--TGG---TGACAGGAAAAGCCCA 1004254 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| || | | ||| ||| | |||| | ||||||||| || | |||| || Sbjct 1004255 CATGAAAAGGT--TGAAGTAACTTTGCTAGTA---GTTGGCTGCCCCAGGGTAGTTTTCT 1004309 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| || |||| || | ||| | || | | | | |||| || Sbjct 1004310 CTGTGGTAACTTTTCTATCATCTCTTGCTTAAAACCTAGAAAGTC-AGAAGATCCTGAGA 1004368 Query 271 CCACACTTTCATGGTTTGTAT 291 ||||||| ||||| ||||| Sbjct 1004369 CCACACTAGCATGGCCTGTAT 1004389 >seq1685 Length=1138 Score = 73.4 bits (80), Expect = 7e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| |||||| |||| || || |||||||||||||||||||||||||||||| Sbjct 1074 TACTAAGTTCAATTACTATTGCGGTAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 1133 Query 61 TGACG 65 |||| Sbjct 1134 CGACG 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854377349856