Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06]
2,651 sequences; 1,202,994,831 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq486 365 9e-99
seq1818 93.3 8e-17
seq1947 80.6 5e-13
>seq486
Length=271
Score = 365 bits (404), Expect = 9e-99
Identities = 236/256 (92%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 74 TCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCTTAGAGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 212
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
||||||||| ||||||||||||||||||||||||||||| |||||| ||||| | |||
Sbjct 211 GCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACC 154
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 153 TTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTA 94
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 93 ATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTAC 34
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 33 GTCCCTGCCCTTTGTA 18
>seq1818
Length=3519004
Score = 93.3 bits (102), Expect = 8e-17
Identities = 141/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
|||||||||||||||| | |||| ||| || |||||||||| | || | || | |
Sbjct 1425877 TGATGCCCTTAGATGTCCAGGGCTACACATGCACTACACTGACTGGCTCAGCTTGTGCCT 1425936
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
||| ||||| || ||| | | | || | | | ||| ||||| | | | ||
Sbjct 1425937 ACCCTCCGCCGGCTGGCGCAGGTCACCCATTGAACCCCATTTGTGATGGGGGTCGCGGAT 1425996
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||| || | | | |||||||||| || |||||| ||| ||||| | | |||||
Sbjct 1425997 TGCAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCAT--ACTTGTGTTGA 1426054
Query 309 TTACGTCCCTGCCCTTTGTA 328
||| |||||||||| |||||
Sbjct 1426055 TTAAGTCCCTGCCCCTTGTA 1426074
>seq1947
Length=2772361
Score = 80.6 bits (88), Expect = 5e-13
Identities = 83/105 (79%), Gaps = 3/105 (3%)
Strand=Plus/Minus
Query 68 CCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126
|| ||||||||| ||||| | ||| | |||| | || ||||| ||||||||||||
Sbjct 644706 CCAGCTTCTTAGGGGGACAAGTGGCGTTCAGCC-ACCCAAAATTGAG-CAATAACAGGTC 644649
Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
||||||||| |||||||| | |||||| | |||||||||||||
Sbjct 644648 TGTGATGCCTTTAGATGTCCGGGGCCGTGTGTGCGCTACACTGAC 644604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947174889728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |