Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq486 365 9e-99 seq1818 93.3 8e-17 seq1947 80.6 5e-13 >seq486 Length=271 Score = 365 bits (404), Expect = 9e-99 Identities = 236/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 74 TCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 271 TCTTAGAGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 212 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 ||||||||| ||||||||||||||||||||||||||||| |||||| ||||| | ||| Sbjct 211 GCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACC 154 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||| | Sbjct 153 TTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTA 94 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| Sbjct 93 ATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTAC 34 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 33 GTCCCTGCCCTTTGTA 18 >seq1818 Length=3519004 Score = 93.3 bits (102), Expect = 8e-17 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||| | |||| ||| || |||||||||| | || | || | | Sbjct 1425877 TGATGCCCTTAGATGTCCAGGGCTACACATGCACTACACTGACTGGCTCAGCTTGTGCCT 1425936 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||| ||||| || ||| | | | || | | | ||| ||||| | | | || Sbjct 1425937 ACCCTCCGCCGGCTGGCGCAGGTCACCCATTGAACCCCATTTGTGATGGGGGTCGCGGAT 1425996 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || | | | |||||||||| || |||||| ||| ||||| | | ||||| Sbjct 1425997 TGCAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCAT--ACTTGTGTTGA 1426054 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||| ||||| Sbjct 1426055 TTAAGTCCCTGCCCCTTGTA 1426074 >seq1947 Length=2772361 Score = 80.6 bits (88), Expect = 5e-13 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 68 CCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 || ||||||||| ||||| | ||| | |||| | || ||||| |||||||||||| Sbjct 644706 CCAGCTTCTTAGGGGGACAAGTGGCGTTCAGCC-ACCCAAAATTGAG-CAATAACAGGTC 644649 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 ||||||||| |||||||| | |||||| | ||||||||||||| Sbjct 644648 TGTGATGCCTTTAGATGTCCGGGGCCGTGTGTGCGCTACACTGAC 644604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947174889728