Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq788 307 3e-81 seq2473 183 1e-43 seq2305 167 8e-39 seq1569 138 4e-30 seq1892 82.4 2e-13 seq1655 78.8 3e-12 >seq788 Length=390 Score = 307 bits (340), Expect = 3e-81 Identities = 222/252 (88%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 263 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATC 204 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 203 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 144 Query 127 GGCCCGCGAA--GGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| |||| ||||||| || || |||| ||| |||| |||| |||||||||| Sbjct 143 AGCCC-CGAATGGGACCTTGAATGCTAGAACGTGGAAAATGAATTCCAGCTCCGCTTCAT 85 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 ||| |||||||| |||| |||| ||||||||||||||||| |||||||| |||||||| Sbjct 84 TGAATAAGTAAAGAAACTATAAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 28 Query 244 TTATTCTACACC 255 |||||||||||| Sbjct 27 TTATTCTACACC 16 >seq2473 Length=150236 Score = 183 bits (202), Expect = 1e-43 Identities = 159/198 (80%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||| |||||||| |||||| |||| |||||| | |||||| || |||| Sbjct 142539 GGCTCCCATTTATTCTATACCTCTGAAGTATCTTCACAGCACCAGACTAGGGTTGTGCTC 142598 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||| |||||||| |||||| |||| ||||||||||||||| || Sbjct 142599 AACAGGGTCTTCTTTCCCTGCTGATTCTTTCAAGCCTGTTCTCTTGGCTGTGGTTTCACT 142658 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 | ||||| |||||||||||| ||| |||||||||||| ||||||||| || Sbjct 142659 GGCTAGTAAGTAGGGACAGTGG-------GTTCATCCATTCATGCATATCACTAATTGGA 142711 Query 415 TGACGAGGCATTTGGCTA 432 ||| |||||||||||||| Sbjct 142712 TGATGAGGCATTTGGCTA 142729 >seq2305 Length=4220723 Score = 167 bits (184), Expect = 8e-39 Identities = 153/193 (79%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||| |||| | | ||| |||||| | |||||||||| || |||||| Sbjct 2606687 CCACTTATTCTATACCTTTTATGTCTCTTCACAGCACCAAACTAGAGTCATGCCCAACAG 2606628 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||| ||| |||||||| ||| || ||| |||||||||||||||| || || Sbjct 2606627 GGTCTT---TCCTTGCTGATTCTACCACACCTGTTTCCTTGGCTGTGGTTTCACTGGAGG 2606571 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||| |||||||| | ||||||| ||| ||||||||||| | || ||||||||||||| Sbjct 2606570 GTAGGTAGGGACAATAGGAATCTTGTTCATCCATTCATGTACATCGCTAATTAGATGACA 2606511 Query 420 AGGCATTTGGCTA 432 |||||||||| || Sbjct 2606510 AGGCATTTGGTTA 2606498 >seq1569 Length=1076244 Score = 138 bits (152), Expect = 4e-30 Identities = 121/149 (81%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||| ||||||||||||| ||||||||| || |||| || ||||| Sbjct 597349 GAGTCAAGCTCAACAAGGTCTTCTTTCCCTGCTGATTCCACCCAGCCTCTTTGACTGGCT 597290 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||| || |||||||| |||||||||| |||||||| || | |||||| || | Sbjct 597289 GTGGTTTCACTGGATAGTAGGTAGGGACAGTAGGAATCTCATTCTTTGGTTCATGTGCAT 597230 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 ||| || ||||| ||||||||||||| Sbjct 597229 CAC--AT--CATGACAAGGCATTTGGCTA 597205 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||| |||| ||||||| |||| |||| | ||||||||||| |||||| Sbjct 597557 CTTTTGCTCTGTGGGAGGTTTCTGTCCTCCCTGAGCTCAGCTTAGGACACCCATGTTATG 597498 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACC 103 ||| ||| ||||| ||||||| ||||||||| ||| Sbjct 597497 CTTTGGCAGGTGTGCTGCCCCAGTCAAACTCCCAACC 597461 >seq1892 Length=1154961 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 49 TAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||||||||||| |||||| ||| |||| ||| ||||||||| ||||||||||||||| || Sbjct 1106312 TAGGACACCTGTGTTATGCTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCA 1106253 Query 109 ATGTC 113 |||| Sbjct 1106252 CTGTC 1106248 >seq1655 Length=1502 Score = 78.8 bits (86), Expect = 3e-12 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635156650848