Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1865 129 5e-25 seq2024 95.1 1e-14 seq2512 87.8 1e-12 >seq1865 Length=263943 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 31521 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 31580 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 31581 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTG 31640 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| ||||| |||| || ||||| || | ||||||||| Sbjct 31641 AGACTCGATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 31680 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || ||||| ||||||||||| ||||||| || | ||||| ||||| || | Sbjct 32864 CATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCTTCTTT 32923 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 32924 TCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 32982 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 32983 AGATGGCAAA--AGCCC 32997 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| ||| | |||||||||||||| |||||||| || | || | ||||||| Sbjct 28639 TCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGTAATAAATA 28698 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | ||||| ||| || | || |||| || Sbjct 28699 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGGCTTTC-AAAGGGGTACCTCA 28756 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| ||| ||||| || || || ||||| || ||||||||||| || | Sbjct 28757 TCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 28816 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 28817 TGGAGCGT 28824 >seq2024 Length=1447008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | ||||| || |||||||| |||||||||| Sbjct 562956 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAGGCTCGGTGTTTCTATGGCTTCCAGA 563015 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| ||| | || || || ||||||||| ||||||| || || ||||| Sbjct 563016 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACAT 563070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 || || || |||| || || || || || ||||| | ||||||||| |||| | || Sbjct 562125 GAGCCGCTGTTGCGGGACAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 562184 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||| || || ||||||||||||| ||||||||| Sbjct 562185 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 562237 >seq2512 Length=5690391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 2937781 CAGGAGGTACAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 2937722 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 2937721 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 2937679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555154950640