Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1968 98.7 4e-15 >seq1968 Length=216358 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | || | |||||| || ||||||||||||| ||||||||| ||||||| Sbjct 193211 CTCCTTGAGGCGAGGGACGCCCAGCGTGACGTTCTTGGCCGAGACGCCGGCGTAGTGGAA 193152 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||| ||| || || || | ||||| |||| || || || Sbjct 193151 GGTGTTGAGGGTCATCTGGGTGGCCGGTTCTCCCAGCGACTGGGCCGCCAGCGCACCCAC 193092 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 193091 CATCTCCCCGGG 193080 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | || | |||||| || ||||||||||||| ||||||||| ||||||| Sbjct 193693 CTCCTTGAGGCGAGGGACGCCCAGCGTGACGTTCTTGGCCGAGACGCCGGCGTAGTGGAA 193634 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||| ||| || || || | ||||| |||| || || || Sbjct 193633 GGTGTTGAGGGTCATCTGGGTGGCCGGTTCTCCCAGCGACTGGGCCGCCAGCGCACCCAC 193574 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 193573 CATCTCCCCGGG 193562 Score = 86.0 bits (94), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 351147 GGTTGATGCCGATGGTGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACC 351206 |||||| || || |||| | | || || ||||| |||||||| |||| |||||| Sbjct 173615 GGTTGAGGCGGAAGGTGGACCAGGGCAGGATGCGC---ACGCGGTGGCCCATCATGGACA 173559 Query 351207 CGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCT 351266 ||||| |||||||||||||| ||| ||||| |||||| || || | || ||| | || Sbjct 173558 TCTTGTGCAGCGTGGGCTGGCGGTTGAAGATGACGATGTCCCCGTCACACATGTGTCGCT 173499 Query 351267 CCACCT 351272 |||||| Sbjct 173498 CCACCT 173493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084666662802498