Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq277 192 1e-44 seq1534 91.5 4e-14 >seq277 Length=233 Score = 192 bits (212), Expect = 1e-44 Identities = 146/172 (85%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 8821 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 8880 ||||| || | |||| ||||||||| ||||||||||| || |||| |||||||| || Sbjct 61 GGCTCTTCACGATCGAGGGTGTAGG---TGGGGTCTGAATCCTCCGGCTTCGAGCAGACT 117 Query 8881 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAG 8940 | |||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||| Sbjct 118 CCTCGCGATGTAGTTGGTCAGGTTCCGGAAGCCGAGGGCGGTGCCGCGCAGGTGTTCGAG 177 Query 8941 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAG 8992 ||| ||||||| |||||||| || ||||||||||||||||| || |||||| Sbjct 178 CCGCCCGTTGATGGCCTCGGTGGGGCCGTTGCTGGTGCCGGGCCGGTCGAAG 229 >seq1534 Length=926 Score = 91.5 bits (100), Expect = 4e-14 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 10135 GGTAGCGTCGGACACGTCGAGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCG-G 10193 |||||||| | |||||||||||||| ||||||| | | |||||| |||||| ||| | Sbjct 334 GGTAGCGTGGAGCACGTCGAGGTCTTCCGGATGGGCAGTGCAGGAACTTCCATCCTCGTG 393 Query 10194 GAGACCTCGACGTCTATCTGCGGACCGACGCGCCCGGCCGACCTACACCCTC-ATCTGAG 10252 ||||||||||| ||| | | |||||| ||| | | ||| |||||||||| ||| | | Sbjct 394 GAGACCTCGACCCCTACCAGACCACCGACACGCTCAGGCGA-CTACACCCTCGATC-GTG 451 Query 10253 AAGACCCCGCAATCAACCTCGACGAC 10278 |||| || | ||| | || ||||| Sbjct 452 AAGAGCCAGTTATCCTCATCTACGAC 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126722410573724