Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq37166 376 8e-102 seq27581 320 5e-85 seq20271 188 2e-45 seq32893 172 2e-40 seq6000 158 4e-36 seq15561 80.6 9e-13 >seq37166 Length=223 Score = 376 bits (416), Expect = 8e-102 Identities = 217/223 (97%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 60 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 120 Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCA 180 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 CTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAAC 223 >seq27581 Length=13679 Score = 320 bits (354), Expect = 5e-85 Identities = 248/296 (84%), Gaps = 7/296 (2%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||| ||||||||||| ||| || || | |||||||| |||||||||| Sbjct 10955 TCCCACTTAATCTACACCTCTTGTGTCTCTTTGCAGCACCAGACTAGAGCCAAGCTCAAC 11014 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||||||||||| |||||| | |||||||||||||||||||| || || Sbjct 11015 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGTCTGTTCCCTTGGCTGTGGTTTCCCTGGA 11074 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 || |||||||| |||||| || || || | ||||| ||||||||| |||||| Sbjct 11075 CAG-------GGACAGTGCAAATCTCATTCATTCAGTTATGCGTGTCACTAATGAGATGA 11127 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||||||||||||| ||||||||||||||||||||||||| || |||||| |||||| | Sbjct 11128 CGAGGCATTTGGCTGCCTTAAGAGAGTCATAGTTACTCCCACCATTTACCTGCGCTTCAT 11187 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| ||||||| ||||||||||||||| ||||||||||| ||||| | ||||||| Sbjct 11188 TGAACTTCTTCAATTTGACATTCAGAGCGCTGGGCAGAAACCACATCGTGTCAACA 11243 >seq20271 Length=45446 Score = 188 bits (208), Expect = 2e-45 Identities = 163/199 (82%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| |||||||||||||||| ||| ||||||| | | |||||||||||||||| Sbjct 42071 CTCCCAGTTATTCTACACCTCTCGTGTC--TTCACAACACCAGGCTAGAGTCAAGCTCAA 42014 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||| | ||||||| || ||||| ||||||||||||||| ||| ||||| Sbjct 42013 CAGCGTCTTCTTTCTCTACTGATTCAGCTAAGCCTGTTCCCTTGGCTGTGATTTTGCTAG 41954 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT-AATTAGA- 414 |||| || |||| ||||| ||| ||| ||| || ||||||| | ||| || ||||||| Sbjct 41953 ATAGGAGGTAGGAACAGTAGGAGTCTTGTTCATGCATTCATATGTGTCGCTAAATTAGAT 41894 Query 415 -TGACGAGGCATTTGGCTA 432 |||| |||| |||||||| Sbjct 41893 GTGACAAGGCTTTTGGCTA 41875 >seq32893 Length=21264 Score = 172 bits (190), Expect = 2e-40 Identities = 158/198 (80%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| ||||||||||||||||| || ||||||| | |||||||||||||||||| Sbjct 20773 CTCCCAGTTATTCTACACCTCTCATGTGTCTTCACAACACCAGACTAGAGTCAAGCTCAA 20832 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||| | ||||||| || ||| ||||||||||| ||| ||||| Sbjct 20833 CAGCGTCTTCTTTCTCTACTGATTCAGCTAAG-------CCTTGGCTGTGATTTTGCTAG 20885 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT-AATTAGA- 414 |||| || |||| ||||| ||||||| ||| |||||||||| | || || ||||||| Sbjct 20886 ATAGGAGGTAGGAACAGTAGGAATCTTGTTCATCCATTCATATGTGTTGCTAAATTAGAT 20945 Query 415 -TGACGAGGCATTTGGCT 431 |||| |||| ||||||| Sbjct 20946 GTGACAAGGCTTTTGGCT 20963 >seq6000 Length=18215 Score = 158 bits (174), Expect = 4e-36 Identities = 136/168 (81%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || |||||||||| ||||||||||||| ||||| |||| ||| |||||||| ||| | Sbjct 5095 GAGTAGAGTCAAGTTCAACAGGGTCTT---TCCCCACTGAGTCCACCAAGCCCCTTCTCG 5039 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||| || |||| | | |||||| |||||||| | |||||| ||| ||||||||||| Sbjct 5038 TGGCTCTGATTTCAATGGCTAGTAGGTAGGGACATTAAGAATCTTGTTTATCCATTCATG 4979 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 | |||||||||| |||| |||| | | ||||| ||||||||||||| Sbjct 4978 CATGTCACTAATTGAATGATGAGGTACTCGGCTAACTTAAGAGAGTCA 4931 >seq15561 Length=12026 Score = 80.6 bits (88), Expect = 9e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| |||| | |||| |||| | ||||||||||||||| ||||| Sbjct 2048 CTTCTGCTCTGCGGGAGGTTTCCATCCTCCCTGAGCTCACCTTAGGACACCTGCATTATG 2107 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| || | ||| | ||| ||| |||| |||| ||||| Sbjct 2108 CTTTGACGGGTGTACTGCCTCAGTCAAAGTCCCTACCTG 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634510272640