Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq34224 111 1e-19 seq15601 87.8 1e-12 seq4120 86.0 5e-12 >seq34224 Length=26671 Score = 111 bits (122), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| |||||||| || ||||| || ||||| |||||||||| ||||| || Sbjct 11328 GGTATACTCCACAATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 11269 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | || ||||| | ||||||||| ||||||||||| || Sbjct 11268 GTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGTGTGCCGGTCTCGGTCTG 11209 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| ||||| || | || ||||| || | ||||||||| Sbjct 11208 TGACTCGATGATAGCATACC--AGAGCTGCTGGGCCTTCACC 11169 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | |||||||| || || | Sbjct 9665 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGTTGTTCTTCCTT 9606 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| || |||||||||||||| |||||| || ||||||| Sbjct 9605 CCCAGTG-TTCTTCTTCAAGTCAAGAAACTCAAAGATGTCCAAATGCCAGGGCTCCAGGT 9547 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 9546 AGATGGCAAA--AGCCC 9532 >seq15601 Length=90986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| || || || || || ||||| | ||||||||| |||| | || Sbjct 172 GAACCGCTGCTGCGGGAAAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 231 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||| || || ||||||||||||| ||||||||| Sbjct 232 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || || |||||||| |||||||||||||||||||| ||| | || || || |||||| Sbjct 1575 GAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGTAC 1634 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 1635 AGTCTTCTTATTGACACCTACAT 1657 >seq4120 Length=36603 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || || |||||||| ||||| |||| Sbjct 29483 TGGCACGTTTTAGCCAGGAGGTGCAGATCCCAGAAGCCCGCTGTTTCTATGGCTTTCAGA 29424 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | || || || || ||||||| Sbjct 29423 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTTATAGACACCTACATCA 29367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397363622715200