Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1131 342 9e-92 seq5455 251 1e-64 seq5113 132 8e-29 seq1336 95.1 2e-17 seq3272 86.0 1e-14 seq1934 73.4 7e-11 >seq1131 Length=6011 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 5511 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 5452 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5451 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 5392 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5391 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 5332 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 5331 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 5272 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 5271 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 5218 >seq5455 Length=27015053 Score = 251 bits (278), Expect = 1e-64 Identities = 179/204 (88%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||||||| ||| |||||||| || ||||||| |||||||||| ||||||| Sbjct 13243235 TCATCAGGAGGGTAAAAGTAATCTGTCTCACGATGGTCTAA-CCCAGCTCACATTCCCTA 13243293 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| ||||||| ||||||||||| |||||||||||| |||||||||||||| || Sbjct 13243294 TTAGTAGGTGAACGATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 13243353 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| Sbjct 13243354 CATCGAAGGATCAAAAA-----GTCGCTATGAACGCTTGGCCGCCACAAGCTAGTTATCC 13243408 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 |||| |||||||||||| |||||| Sbjct 13243409 CTGTAGTAACTTTTCTGACACCTC 13243432 >seq5113 Length=4438548 Score = 132 bits (146), Expect = 8e-29 Identities = 189/263 (72%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| ||||||||| | ||||||||||||||| |||| | Sbjct 1204901 TCATCAGGAGGATAAAACTAACTTGTCTCATGGCAGTCTAAACCCAGCTCGTGTTCATTG 1204842 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||| ||| ||||| ||| |||||||| || | ||| ||||| |||| | Sbjct 1204841 TTAATGGGTAAACTGACCAACACTTGGTGAATTCTGTTTTGTGGTGACAGGAAAAGCCAA 1204782 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||| | ||| ||| | ||| || ||| ||||| || | ||| | Sbjct 1204781 CATCAAAGGGT--TGAAGTAACTTTGCT---AATAGTTGACTGCCGCAGGGTGGTTTCCT 1204727 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||| ||||||| | |||| || | ||| | | ||| || |||| ||| Sbjct 1204726 CTGTGGTAAGTTTTCTGATATCTCTTGCTTAAAACCTACAAAGACCGAA-GATCCTGAGG 1204668 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||||||| ||||| ||||||| Sbjct 1204667 CCACACTAGCATGGCCTGTATTC 1204645 >seq1336 Length=280291 Score = 95.1 bits (104), Expect = 2e-17 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||| |||||| ||||||||| ||||||| ||||| | |||| ||||| ||||||| Sbjct 148859 TCCTCAGTTGGGTAATACTAACCTGACTCATGATGGTCTCA-CCCAACTCACATTCCCTA 148801 Query 91 TTAGTGGGTGAACAATC 107 ||||||||||||||||| Sbjct 148800 TTAGTGGGTGAACAATC 148784 >seq3272 Length=10697777 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||| |||||||| |||| |||| ||| || ||||||||||||||||||||||||| Sbjct 10543782 TCAGCAGCAGGGTAAACCTAAACTGTTTCACAACAGTCTAAACCCAGCTCACGTTCCCTA 10543841 Query 91 TTAGTGGGTGAA 102 ||| | |||||| Sbjct 10543842 TTATTTGGTGAA 10543853 >seq1934 Length=8216997 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/62 (87%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| ||||||||||||||||||||| | ||||| ||| | ||||| ||||||| Sbjct 4783940 TCATCAGTAAGGTAAAACTAACCTGTCTCATAATGGTCT-AACACTGCTCATGTTCCCTC 4783882 Query 91 TT 92 || Sbjct 4783881 TT 4783880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853891162080