Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1131 306 1e-80 seq5455 221 4e-55 seq2058 215 2e-53 seq59553 107 6e-21 seq3050 102 3e-19 seq2988 86.0 2e-14 >seq1131 Length=6011 Score = 306 bits (338), Expect = 1e-80 Identities = 184/194 (95%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||||||||| ||| |||||| | | |||||||||||||||||||| Sbjct 5083 CCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACA 5024 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5023 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAT 4964 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4963 AGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGAC 4904 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 4903 GAGGCATTTGGCTA 4890 >seq5455 Length=27015053 Score = 221 bits (244), Expect = 4e-55 Identities = 165/196 (84%), Gaps = 13/196 (7%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| || |||||| | | |||||||| ||||||||| Sbjct 13243782 CTCCCACTTATTCTACACCTCTCATGTGTCTTCACAGGGCCAGACTAGAGCCAAGCTCAA 13243841 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| Sbjct 13243842 CAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCCCTTCCCTTGGCTGTGGTTTTGCT-- 13243899 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||| |||| || ||||||||||| ||||||||||||||||| Sbjct 13243900 -----------GGACAGTGGGATTCTCATTCATCCATTCATGTGCGTCACTAATTAGATG 13243948 Query 417 ACGAGGCATTTGGCTA 432 || | ||||||||||| Sbjct 13243949 ACAAAGCATTTGGCTA 13243964 Score = 84.2 bits (92), Expect = 7e-14 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||| ||| ||| |||| || |||| ||||| |||||||||||| || ||| Sbjct 13243510 CTTCTGCTTCACAAGAGGTTTCCGTCCTCCCTGAGTTTGCCTTAGGACACCAGCATTACA 13243569 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| | ||| ||||||||||||||||||| Sbjct 13243570 CTTTGACAGGTGTACTGCCTCAGCCAAACTCCCCACCTG 13243608 >seq2058 Length=7968998 Score = 215 bits (238), Expect = 2e-53 Identities = 166/197 (84%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||| |||||||||||| | ||| || ||| | ||||||||| |||||| Sbjct 1120251 CTTCCACTTGTTCTACACCTCTTATGTCTCTTTACAGCACCAAACTAGAGTCGTGCTCAA 1120192 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||| | | Sbjct 1120191 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTTCCCTTGGCTGTAGTTTCATTGG 1120132 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||||||||||||||||| || || ||||||||| | |||||||||||||| Sbjct 1120131 ATAGTAAGTAGGGACAGTGGGAATCTTATTCATGCATTCATGCACATCACTAATTAGATG 1120072 Query 417 ACGAGGCATTTGGCTAC 433 || |||||||||||||| Sbjct 1120071 ACAAGGCATTTGGCTAC 1120055 >seq59553 Length=16526472 Score = 107 bits (118), Expect = 6e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||||| Sbjct 642322 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTATG 642263 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| ||||||||| ||||||||||||||| Sbjct 642262 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTG 642224 >seq3050 Length=4282682 Score = 102 bits (112), Expect = 3e-19 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | |||| | |||| |||| || |||| |||| | ||||| || |||||| ||| | Sbjct 114518 CTTCTCCTCTGCGGGAGGTTTCCGTCCTCCCTGAGCTCACCTTAAGAGACCTGCCTTACG 114577 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 |||| |||| ||| | ||||||||||||||||||||||||| |||| ||| Sbjct 114578 GTTTGACAGGTGTACAGCCCCAGCCAAACTCCCCACCTGACGCTGTCCTCA 114628 >seq2988 Length=11681399 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||| ||||| | |||| |||| || |||| |||| | ||| ||||||||||| ||| Sbjct 11191543 CTTTAGCTCTGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTCAGGACACCTGCATTACA 11191484 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||| | |||| |||||||||| | |||| Sbjct 11191483 CTTTGACAGGTGTACCGCCCCGGTCAAAATCCCCACCTGCCGTTGTC 11191437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634226156640