Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq59554 136 1e-29 seq551 75.2 3e-11 >seq59554 Length=17215544 Score = 136 bits (150), Expect = 1e-29 Identities = 104/122 (85%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| || || | ||||||||||| Sbjct 10974831 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTACTTTTCATCACTACCTCC 10974772 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| ||||||||| || ||||||||||||||||||||||||| ||||| ||| Sbjct 10974771 CCGGGTCGGGAGTGGGTAATTCGCACGCCTGCTGCCTTCCTTGGATGTGGCAGCCGGTTC 10974712 Query 123 TC 124 || Sbjct 10974711 TC 10974710 >seq551 Length=4753096 Score = 75.2 bits (82), Expect = 3e-11 Identities = 49/53 (92%), Gaps = 1/53 (2%) Strand=Plus/Minus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || |||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 2808876 ATTCTTAGACATGCATGGCTTAAGCTTTGAGACAAGCATAT-TCTACTGGCAG 2808825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509500481280