Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 111 7e-22 seq3 100 1e-18 seq35 78.8 4e-12 >seq1 Length=194437802 Score = 111 bits (122), Expect = 7e-22 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 53 TGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGAC 112 |||||||||||| | || ||| |||||| | | ||||| |||||||| ||| ||||| Sbjct 13517986 TGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGAC 13517927 Query 113 CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAA 172 ||||||| ||||||| || | ||||| ||||||| |||||| | |||||||| || | Sbjct 13517926 CGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGA 13517867 Query 173 GCACGTGAAATTGTTGAAAGGGAA 196 | ||||||| ||| | ||| || Sbjct 13517866 GGGCGTGAAACCGTTAAGAGGTAA 13517843 >seq3 Length=112045409 Score = 100 bits (110), Expect = 1e-18 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 83366069 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 83366128 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| ||||| || Sbjct 83366129 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAGCTTTGAAA 83366188 Query 160 AGA 162 || Sbjct 83366189 GGA 83366191 >seq35 Length=75253249 Score = 78.8 bits (86), Expect = 4e-12 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||| |||| ||||||||| ||| ||||||||||||||||||||| | Sbjct 52120886 GGACCCATAAGATTATGAATTATGCCTGAGCAGGACAAAGCCAGAGGAAACTCTGGTGAA 52120945 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || | |||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 52120946 GGTCTGTAGCGGTCCTGACATGCACATCAGTCGTCCAAACCAGGTGTAGGG 52120996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079947104300