Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2 159 6e-37 seq699 136 6e-30 seq3 95.1 2e-17 seq35 89.7 8e-16 >seq2 Length=147128157 Score = 159 bits (176), Expect = 6e-37 Identities = 186/247 (75%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || ||| ||||| || ||||||||||||||||| | ||||| ||| | Sbjct 96623683 GTCAGTGTAGCATGCATGCAGCCCA-AATATCTAAGGGCATCACAGGCGTGTTACTGCTT 96623741 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAG 132 || || |||||| | |||| | ||||||||||||| | ||||||| | || Sbjct 96623742 --AATCTCAGATGGCTGAATGCCACTTGTCCCTCTAAGAATGTGGACACCAACTGCTGAG 96623799 Query 133 TCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | ||| |||||| | | | ||| || || | |||||||||||||||| Sbjct 96623800 GTGTCACGTAACTAATTAGCATGCCAGAGACTCAGTCATTGTTGGAATTAACCAGACAAG 96623859 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 | |||||||||||||||| ||||||||||||||| |||| |||| |||||||| | || Sbjct 96623860 TAGCTCCACCAACTAAGAATGGCCATGCACCACCATCCATGGAATTGAGAAAGAGTTCTC 96623919 Query 251 AATCTGT 257 | ||||| Sbjct 96623920 AGTCTGT 96623926 >seq699 Length=1347688 Score = 136 bits (150), Expect = 6e-30 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| Sbjct 839754 GTCTCGTTCGTTATCAGAATTAACCAGACAAATCTCTCCACCAACTAAGAACATCCATGC 839695 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| |||||||||| |||||||||| Sbjct 839694 ACCACCACCCACGAAATTGAGAAAGAGCTCTCAATCTGTC 839655 >seq3 Length=112045409 Score = 95.1 bits (104), Expect = 2e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 72380494 CACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCAATCTG 72380553 Query 257 TC 258 || Sbjct 72380554 TC 72380555 >seq35 Length=75253249 Score = 89.7 bits (98), Expect = 8e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||| |||||||| |||| |||||| || ||||||| ||||||||||| |||||| ||| Sbjct 69432523 GAACTAACCAGATAAATAACTCCATCAGCTAAGAAAACCCATGCACCACAACCCATGGAA 69432464 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||| |||||||||| Sbjct 69432463 GTAAGAAGGAGCTCTCAATCTGTC 69432440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796780964946