Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2 340 3e-91 seq9 304 2e-80 seq16 291 1e-76 seq3 201 2e-49 seq1 178 2e-42 seq17 102 1e-19 seq8 100 5e-19 >seq2 Length=147128157 Score = 340 bits (376), Expect = 3e-91 Identities = 233/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 123167121 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 123167180 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 123167181 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 123167240 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 123167241 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 123167300 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 123167301 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 123167360 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 123167361 CCCCGCTTTCACGGTCTGTATTC 123167383 Score = 159 bits (176), Expect = 6e-37 Identities = 117/136 (86%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||| |||||||| |||| |||||||||||| ||||||||||||| |||| || Sbjct 40985215 GGTGAGCAATCCAATGCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCTGACACTGA 40985274 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 40985275 AGGATCTAAAAGTGACGTCGCTATGAACGCTTGGCTGCCACAAGCTGGTTATCCCTGTGG 40985334 Query 217 TAACTTTTCTGGCACC 232 |||||||| || |||| Sbjct 40985335 TAACTTTTTTGACACC 40985350 >seq9 Length=61178980 Score = 304 bits (336), Expect = 2e-80 Identities = 218/251 (87%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| Sbjct 44102890 TCATCAGTAGGGTAAAACTAACCTGTATCACGACGGTCTAAGCCCAGCTCACGTTCCCTA 44102831 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 44102830 TTAGTGGATGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 44102771 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 44102770 CATCGAAGGATCAAAAAGCGATGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 44102711 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||| || |||||| || | ||| | | | |||||||| ||| Sbjct 44102710 CTGTGGTAACTTTTTTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 44102651 Query 271 CCACACTTTCA 281 || | |||||| Sbjct 44102650 CCCCGCTTTCA 44102640 Score = 271 bits (300), Expect = 1e-70 Identities = 179/197 (91%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||| ||||||| |||||||||||||||||||| ||||||| Sbjct 10105505 TCATCTGTAGGGTAAAACTAACTTGTCTCACAACGGTCTAAACCCAGCTCAC-TTCCCTA 10105563 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| ||||||| |||||||||| |||||||||||| ||||||||||||||||| Sbjct 10105564 TTAGTGAGTGAACATTCCAACGCTTGATGAATTCTGCTTCACAATGATAGGAAGAGCCGA 10105623 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||| Sbjct 10105624 CATCGAAGGATCAAAAAGCGATGTTGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 10105683 Query 211 CTGTGGTAACTTTTCTG 227 |||||| |||||||||| Sbjct 10105684 CTGTGGCAACTTTTCTG 10105700 Score = 89.7 bits (98), Expect = 9e-16 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||| |||||| | |||||||| || | || || ||||| || | Sbjct 33425686 GTCATTAGTGGGGTAACAGTAACCTGTATCGCAGTGTGGTAGTCCTAGCTCCTCTTTGTT 33425627 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||| ||||||||||| | ||| | | ||| |||| || |||||||||| Sbjct 33425626 GTTAGTGGATGAACAATCCAGCATTTAGTGGACTCTACTTCACAATATCAGGAAGAGCCA 33425567 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||||||| ||||| ||| || || ||||| ||||||| || ||||| Sbjct 33425566 ACATCTGAGGATCAACAAGCAGTGTCACTTTGTTTGCTTGTTCACCACAAGACAATTATC 33425507 Query 210 CCTGTGGTAACTTTTCTGGCACCT 233 || ||| | || |||| ||||| Sbjct 33425506 CCCATGGATAGTTCTCTGTCACCT 33425483 >seq16 Length=20042104 Score = 291 bits (322), Expect = 1e-76 Identities = 187/204 (92%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| Sbjct 3945336 TCATCAGTAGGGTAAAACTAACCTATCTCACAATGGTCTAAACCCAGCTCACGTTCCCTA 3945277 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| Sbjct 3945276 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATTGGAAGAGCCGA 3945217 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| Sbjct 3945216 CTTCGAAGGATCAAAAAGCGACGTTGCTATGAACGCTTGGCTGCCACAAGCCTGTTATCC 3945157 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||| |||||| Sbjct 3945156 CTGTGGTAACTTCTCTGACACCTC 3945133 >seq3 Length=112045409 Score = 201 bits (222), Expect = 2e-49 Identities = 173/214 (81%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| |||||| |||||||||||||||||| || | |||| | ||||||| ||||||| Sbjct 90215075 CATTAGTAGGATAAAACTAACCTGTCTCACAACAGCCTAATCTCAGCTCATTTTCCCTAC 90215016 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||| ||| | ||| | | |||| |||||||||||| ||||| ||| ||| ||| Sbjct 90215015 TAGTGTGTGGAAAATAAAGCACTTAGTGAATTCTGCTTCCCAGTGATATGAAAAGCTGAC 90214956 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 90214955 ACAGAAGGATCAAAAAGCAACATCACTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 90214896 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 || ||||||| | || |||| | || | |||| Sbjct 90214895 TGATGTAACTTCTATGACACCACCTGCTTAAAAT 90214862 Score = 197 bits (218), Expect = 2e-48 Identities = 167/204 (82%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||| || | |||||||| ||| ||||| ||| |||||| ||||||| Sbjct 55206817 TCATCAAAAGGGTAAAATTATC-TGTCTCATTACGTTCTAATCCCGGCTCACATTCCCTA 55206759 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||| || |||| ||||| ||| || ||| ||||| ||| || Sbjct 55206758 TTAGTGGGTGAACAATAAAATGCTTGATGAATTTTGCCTCACAGTGAGAGGAAAAGCTGA 55206699 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||||||||| ||||| ||||||||| ||||| | || |||| ||||||||| Sbjct 55206698 CATCAAAGGATCAAAAAGTAACGTTGCTATGAACACTTGGTTCCCCCAAGACAGTTATCC 55206639 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 || |||||| |||||| |||||| Sbjct 55206638 TTGCGGTAACGTTTCTGACACCTC 55206615 >seq1 Length=194437802 Score = 178 bits (196), Expect = 2e-42 Identities = 113/123 (92%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 184814225 AAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 184814166 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||||||||||| ||||||||||||||||||||||||| || | Sbjct 184814165 ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGAATTGA 184814106 Query 165 AAA 167 ||| Sbjct 184814105 AAA 184814103 Score = 136 bits (150), Expect = 7e-30 Identities = 81/85 (95%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 147050687 TCATCAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACATTCCCTA 147050746 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 |||| |||||||||||||||||||| Sbjct 147050747 TTAGCGGGTGAACAATCCAACGCTT 147050771 Score = 91.5 bits (100), Expect = 3e-16 Identities = 59/64 (92%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||| Sbjct 92864784 TCATCAGTAGGGTAAACCTAACCTGTCTCACGACAGTCTAA--CCAGCTCACGTTCCCTA 92864727 Query 91 TTAG 94 |||| Sbjct 92864726 TTAG 92864723 Score = 77.0 bits (84), Expect = 6e-12 Identities = 122/171 (71%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||| | || | ||||||||||||| | ||| | | || ||||||| Sbjct 113259883 GTCTAAACCCAGCTCATGCTCAGTTTTAGTGGGTGAACCACCCAGCACCTAGTGAATTCT 113259942 Query 126 GCTTCGGT-ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||| || ||| |||| | | |||||| |||||| || || | ||| || Sbjct 113259943 -ATTCAGTGGTGACTGGAAAATCTGACATCAAAGGATTGGAA--TAATTTTGCT---AAT 113259996 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 || || ||||||||| || || || || |||| ||||||| || |||| Sbjct 113259997 GCCTGAATGCCACAAGGCATTTTTCTCTAAGGTATTTTTTCTGACATCTCT 113260047 >seq17 Length=17892257 Score = 102 bits (112), Expect = 1e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| Sbjct 12328517 CATCAGTAGGGTAAAACTCACCTGTCTTATGACAGTCTAATCTGAGCTCACATTCCCTAT 12328576 Query 92 TAGTGGGTGAACAATCCAA 110 | |||||||||||||||| Sbjct 12328577 TTTTGGGTGAACAATCCAA 12328595 >seq8 Length=71586700 Score = 100 bits (110), Expect = 5e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||| Sbjct 9498590 TCATCAGTAGGGTAAAACTGACCTGTCTCACGAGGGTCTAAACCCAGCTCACATTCCCTA 9498531 Query 91 TTAGTGGGTG 100 |||| || || Sbjct 9498530 TTAGAGGATG 9498521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854378930496