Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq2 105 5e-18 seq3 100 2e-16 >seq1 Length=194437802 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 192641655 GGTATACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 192641714 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| | ||||| | || ||||||| |||||| || ||||||||||| || Sbjct 192641715 ATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCGGTCTCCGTCTG 192641774 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| |||||||||| || ||||| || | ||||||||| Sbjct 192641775 CGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 192641814 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| |||||||| |||||||||||| |||| || || | || || ||||| || | Sbjct 192642985 CATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGCTCTTCCTT 192643044 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||| |||||||||| Sbjct 192643045 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGTTCCAGGT 192643103 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 192643104 AGATGGCAAA--AGCCC 192643118 >seq2 Length=147128157 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| |||||||||||| ||| |||||| Sbjct 127701616 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATTCTCATTGAGAAT 127701557 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||||||||||||| | || || || || ||||||| Sbjct 127701556 GTCCACTCGGAGATGTACAGCTTGCTTATAGACACTTACATCA 127701514 >seq3 Length=112045409 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || |||||| | | || |||||||||||||| |||||||||| Sbjct 97250618 TGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCGCGTTGTTTCTATGGCTTCCAGA 97250677 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | |||||||| ||| | || || || ||||| ||| ||||||| || |||||||| Sbjct 97250678 TAGCCATGGAAAATATACATTCAGAAATGTATAGTCTTCTCATTGACACGTACAT 97250732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| ||||| || || || ||||| | ||||||||| |||| | || Sbjct 97249859 GAACCGCTGCTGCGGGAGAACCCCCGGCGCTTCGTCATTTTCCCCATCCAGTACCACGAC 97249918 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| |||||||| ||||| || || ||||||||||||| ||||||||| Sbjct 97249919 ATCTGGCGGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 97249971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556051342240