Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq102 145 6e-33 seq3329 111 1e-22 >seq102 Length=1015 Score = 145 bits (160), Expect = 6e-33 Identities = 131/162 (81%), Gaps = 7/162 (4%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACT---ACGATACACTTTCTGGGATTAGCTCCCCCTC 57 |||||||||||||||||||||| ||| ||| || ||| || |||| |||| ||||| Sbjct 974 TCGAGTTGCAGACTACAATCCGAACTGAGACGTTA---TTTTTGAGATTTGCTCACCCTC 918 Query 58 GCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGG 117 ||||| | || |||| ||| | |||||||| ||||||| ||||| | |||||||| Sbjct 917 GCGGGGTCGCTTCCCTTTGT-TACGCCATTGTAGCACGTGTGTAGCCCAAATCATAAGGG 859 Query 118 CCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 ||||| || |||||||||||||||||||||||||| ||||| Sbjct 858 GCATGATGATTTGACGTCATCCCCACCTTCCTCCGGGTTGTC 817 >seq3329 Length=2772 Score = 111 bits (122), Expect = 1e-22 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||| ||| || || ||| | | | ||| | || | Sbjct 982 TCGAGTTGCAGACTCCAATCCGAACTGAGACGCATTTTAAGAGTTCCGCTAAGCATCACT 923 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || | | |||| || |||||||| ||| ||| ||||| |||||||| || Sbjct 922 GCTTCGCATCTCGCTGTTTGCGCCATTGTAGTACGCGTGTAGCCCAGGTCATAAGGGGCA 863 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| || ||||||||||||||||||||||||||||| |||| Sbjct 862 TGATGATTTGACGTCATCCCCACCTTCCTCCGGTTTATCAC 822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415958668320