Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq102 497 3e-138 seq3329 345 1e-92 >seq102 Length=1015 Score = 497 bits (550), Expect = 3e-138 Identities = 358/413 (87%), Gaps = 5/413 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 132 TACCTGACTAAGAAGCCCCGGCTAAATACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 191 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||||||||| |||||||| |||||||| |||||| ||||| |||||| || || Sbjct 192 AAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTTTGTAAGTCTGATGT 251 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGG-----CTAGAGTGCA 175 |||| | |||||||| |||||| ||| || |||||| | | |||||||||| Sbjct 252 GAAAACCCGGGGCTCAACTCCGGGATTGCATTGGAAACTATACTGTCAAGCTAGAGTGCA 311 Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 235 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 GGAGGGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 371 Query 236 AGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 372 GGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACGTTGAGGCTCGAAGGCGTGGGGAGCA 431 Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG 355 |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 432 AACAGGATTAGATACCCTGGTAGTCCACGCGGTAAACGATGAATACTAGGTGTTGGGAGT 491 Query 356 CATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || | | |||||| ||| |||| ||||||||||||||||||||||| Sbjct 492 CTATAGGCTTTCAGTGCCGAAGCTAACGTGATAAGTATTCCACCTGGGGAGTA 544 >seq3329 Length=2772 Score = 345 bits (382), Expect = 1e-92 Identities = 316/399 (79%), Gaps = 9/399 (2%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||| | ||||| |||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 166 AGAAAGTCACGGCTTACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTAT 225 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||||||||| ||| ||| | | || |||||||| | Sbjct 226 CCGGATTTATTGGGCGTAAAGGGTGCGCAGGCGGTCTGTAGGGTTCATGGTGAAAGCGTG 285 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| |||||| | || || |||| | | || |||| |||||| || || || Sbjct 286 GGGCTTAACCCCAT-ATAGCCTTGAAAACCGGCAGACTGGAGTACAGGAGAGGTTAGCGG 344 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct 345 AATTCCATGTGTAGCGGTAAAATGCGTAGATATATGGAGGAACACCGGTGGCGAAGGCGG 404 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || |||| ||||||||||| || | || ||||||||||||||||||| ||||||||||| Sbjct 405 CTAACTGGTCTGTAACTGACGCTCATGCACGAAAGCGTGGGGAGCAAATAGGATTAGATA 464 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 |||| |||||||||||| |||||||||| ||||| || || | | | | | Sbjct 465 CCCTAGTAGTCCACGCCCTAAACGATGAGAACTAGATGCTGG--------AATCTTTCAG 516 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || |||||| |||||||||||| ||| |||| |||||| Sbjct 517 TGTCGCAGCTAACGCAATAAGTTCTCCGCCTGAGGAGTA 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203076599808