Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3183 181 3e-43 seq2416 181 3e-43 seq2611 167 8e-39 seq3170 161 3e-37 seq505 104 8e-20 seq2148 87.8 6e-15 seq1176 80.6 9e-13 >seq3183 Length=462653 Score = 181 bits (200), Expect = 3e-43 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||| | ||| |||||| | | | ||||||| ||||||||||||| ||||| Sbjct 151880 TACACCTCTGATGTCTCTTCACAGTGCCAGGCTAGAGTTGTGCTCAACAGGGTCATCTTT 151939 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||| |||| |||| ||||||| |||| | ||||||||||||| || | | || |||| Sbjct 151940 CCCTGCTGGTTCCACCAAGCCTGTTCTCCTGGCTGTGGTTTCTCTGGCTGGTGAGCAGGG 151999 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 |||||||||||||| || |||||||||||| | ||||||||| ||||| ||||||||||| Sbjct 152000 ACAGTGGGAATCTCATTCATCCATTCATGCACATCACTAATTGGATGAGGAGGCATTTGG 152059 Query 430 CTA 432 ||| Sbjct 152060 CTA 152062 >seq2416 Length=961406 Score = 181 bits (200), Expect = 3e-43 Identities = 139/165 (84%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| | ||| ||||||||| ||| |||||| | |||||||||||||||| Sbjct 507975 CTCCCACCTGCTCTGCACCTCTCATGTCTCTTCACAGCG-----CTAGAGTCAAGCTCAA 507921 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 | |||||||||||||| |||| |||| ||||||| |||||||| |||||||||| ||| | Sbjct 507920 CTGGGTCTTCTTTCCCTGCTGCTTCCACCAAGCCTGTTCCCTTCGCTGTGGTTTTGCTGG 507861 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||| |||||||||| ||||||||||| ||||||||||| || Sbjct 507860 ATAGTAGGTAGGGACAGTAGGAATCTCGTTCATCCATTCATGTGC 507816 >seq2611 Length=16690 Score = 167 bits (184), Expect = 8e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 16690 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 16631 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| ||||||||| Sbjct 16630 GACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 16591 >seq3170 Length=50477 Score = 161 bits (178), Expect = 3e-37 Identities = 95/99 (96%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 11879 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 11820 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||| ||||||||| |||||||| Sbjct 11819 GACATTCAGAGCACTGGGCACAAATCACATCGCGTCAAC 11781 >seq505 Length=2206354 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||||| Sbjct 1294934 CTTCTGCTCCATGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTATG 1294875 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | | |||| ||| ||||||||| ||||||||||||||| | |||| Sbjct 1294874 CTGTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGTCGCTGTC 1294828 >seq2148 Length=9395276 Score = 87.8 bits (96), Expect = 6e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 7717140 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 7717081 Query 297 CAGGGT 302 |||||| Sbjct 7717080 CAGGGT 7717075 >seq1176 Length=1886450 Score = 80.6 bits (88), Expect = 9e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 1056401 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1056342 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAAC 95 ||| |||| ||| || |||||| ||||| Sbjct 1056341 CTTTGACAGGTGTACCTCCCCAGTCAAAC 1056313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635032293888