Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6983 116 3e-21 seq1085 116 3e-21 seq2660 87.8 1e-12 >seq6983 Length=297 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 206 GGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 147 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||| | ||||||||| ||||||||||| || Sbjct 146 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTG 87 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| |||| || ||||| || | ||||||||| Sbjct 86 AGATTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 47 >seq1085 Length=356034 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 330249 GGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 330308 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||| | ||||||||| ||||||||||| || Sbjct 330309 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTG 330368 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| |||| || ||||| || | ||||||||| Sbjct 330369 AGATTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 330408 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 333096 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 333155 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| |||||| || ||||||| Sbjct 333156 TCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGT 333214 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 333215 AGATGGCAAA--AGCCC 333229 >seq2660 Length=4220986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 1853480 CAGGAGGTACAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 1853421 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 1853420 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 1853378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397518305987840