Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30]
1,675 sequences; 1,020,310,768 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq962 219 7e-55
seq2 187 4e-45
>seq962
Length=1476
Score = 219 bits (242), Expect = 7e-55
Identities = 155/176 (88%), Gaps = 1/176 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| | || | || ||||||||||||||||||||||||||||||
Sbjct 176 TACTGAGCAGGATTACTACTGCAACAACACGTCATCAGTAGGGTAAAACTAACCTGTCTC 117
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 116 ACGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTG 57
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175
||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 56 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTC 1
>seq2
Length=150265477
Score = 187 bits (206), Expect = 4e-45
Identities = 201/262 (77%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||| |||||| | |||||||||| | |||| |||||||||| | |||||
Sbjct 146295312 TCATCAGTAGG-TAAAACCACCCTGTCTCATAGAGATCTAGCCCCAGCTCACAT-CCCTA 146295369
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| | || | | |||||||| |||| |||||||||||| || ||| ||||||| |
Sbjct 146295370 TCACAGG-TCAGCAATCCAATGCTTGGTGAATTCTGCTTCCCAGTGGTAGAAAGAGCCAA 146295428
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| ||||||||||||||||| | ||||||||| ||||||| | ||||||||| | ||
Sbjct 146295429 GATGTAAGGATCAAAAAGCAACATTGCTATGAACACTTGGCTACAGCAAGCCAGTCACCC 146295488
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||| ||| |||||| || ||||| | | | | ||| ||| |||
Sbjct 146295489 CTGTGGTAACTTTCCTGACACCTCCTGCTTCAAACACCAAAAGGCAGAAGAATCATGAGG 146295548
Query 271 CCACACTTTCATGGTTTGTATT 292
|| | ||||||||| ||||||
Sbjct 146295549 CCCCGCTTTCATGGGCTGTATT 146295570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854385688800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |