Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq962 219 7e-55 seq2 187 4e-45 >seq962 Length=1476 Score = 219 bits (242), Expect = 7e-55 Identities = 155/176 (88%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| | || | || |||||||||||||||||||||||||||||| Sbjct 176 TACTGAGCAGGATTACTACTGCAACAACACGTCATCAGTAGGGTAAAACTAACCTGTCTC 117 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 116 ACGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTG 57 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 56 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTC 1 >seq2 Length=150265477 Score = 187 bits (206), Expect = 4e-45 Identities = 201/262 (77%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| | |||||||||| | |||| |||||||||| | ||||| Sbjct 146295312 TCATCAGTAGG-TAAAACCACCCTGTCTCATAGAGATCTAGCCCCAGCTCACAT-CCCTA 146295369 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | | || | | |||||||| |||| |||||||||||| || ||| ||||||| | Sbjct 146295370 TCACAGG-TCAGCAATCCAATGCTTGGTGAATTCTGCTTCCCAGTGGTAGAAAGAGCCAA 146295428 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||||||||||| | ||||||||| ||||||| | ||||||||| | || Sbjct 146295429 GATGTAAGGATCAAAAAGCAACATTGCTATGAACACTTGGCTACAGCAAGCCAGTCACCC 146295488 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||| ||| |||||| || ||||| | | | | ||| ||| ||| Sbjct 146295489 CTGTGGTAACTTTCCTGACACCTCCTGCTTCAAACACCAAAAGGCAGAAGAATCATGAGG 146295548 Query 271 CCACACTTTCATGGTTTGTATT 292 || | ||||||||| |||||| Sbjct 146295549 CCCCGCTTTCATGGGCTGTATT 146295570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854385688800