Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq393 266 6e-69 seq12 147 4e-33 >seq393 Length=27842 Score = 266 bits (294), Expect = 6e-69 Identities = 236/294 (80%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || || ||||||||||||||||||||| |||| Sbjct 6731 TACTGAGCAGGATTACTATTGCAACAACACATCGTCAGTAGGGTAAAACTAACCTCTCTC 6790 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || ||||||||||||||||||||||||||||||||| |||||||||| || | Sbjct 6791 ACAACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGCGAACAATCCACTCTTTGGTG 6850 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| ||||| ||||||||||| | || | |||| Sbjct 6851 AATTCTGCTTCACAATGATAGGAAGAGCCAACATCAAAGGATCAAAATGTGACATTGCTA 6910 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 | |||||||| ||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 6911 TAAACGCTTGTCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 6970 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | || ||||| ||||| |||||| ||| ||||||| Sbjct 6971 TAAAATCCAAAAAGTCAGAAAGATCGTGAGGCCCTGCTTTCACGGTCTGTATTC 7024 >seq12 Length=147836772 Score = 147 bits (162), Expect = 4e-33 Identities = 169/226 (75%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||| |||||||||| | |||| | | || ||| ||||||| |||| ||| |||| Sbjct 3546967 TCTAATCCCAGCTCACATCCCCTGTCACAGG-TGAGCAATCCAGTGCTTGGTGAACTCTG 3546909 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 |||| || |||||||||| | || ||||||||||||||||||| || |||| | | Sbjct 3546908 CTTCCCAGTGGAAGGAAGAGCCAAGATGAAAGGATCAAAAAGCAACGTTGCCATGAGCAC 3546849 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||||| ||||| ||||||||| ||| |||||| || | ||| Sbjct 3546848 TTGGCTGCCACAAGCCAGTCCCCCCTGGGGTAACTTTCCTGACACCTCCTGCTTAAAACA 3546789 Query 247 TCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | | | | ||| ||| ||||| ||||||||| |||||| Sbjct 3546788 CCAAAAGGCAGAAGAATCACGAGGCCTGGCTTTCATGGGCTGTATT 3546743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854380340256