Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq124 152 2e-34 seq182 131 5e-28 seq393 93.3 1e-16 seq12 86.0 2e-14 >seq124 Length=119153 Score = 152 bits (168), Expect = 2e-34 Identities = 101/111 (91%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 89629 CCAAGCCTGTTCCTTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGACTCTC 89688 Query 384 GTTAATCCATTCAT--GCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||| |||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 89689 GTTCATCCGTTCATACGCACGTCACTAATTAGATGACGAGGCATTTGGCTA 89739 >seq182 Length=79725 Score = 131 bits (144), Expect = 5e-28 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||| ||| ||||||| |||||| || ||||||||||||||||||| Sbjct 45906 TCAACAGGGTCTTCTTCCCCTTCTGATTCTGCCAAGTCCATTCCCTTGGCTGTGGTTTCA 45847 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 || |||||||| ||||||| |||||||||| ||| || ||||||| Sbjct 45846 CTGGATAGTAGGTAGGGACTGTGGGAATCTTGTTCATTCATTCAT 45802 >seq393 Length=27842 Score = 93.3 bits (102), Expect = 1e-16 Identities = 157/225 (70%), Gaps = 18/225 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| |||| || |||| |||| | |||||||||||||| |||| | Sbjct 7058 CTTCTGCTCCACGGGAAGTTTCCGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTTACG 7117 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT- 125 ||| |||| ||| || |||||| |||| |||||||||| ||||| || ||| | Sbjct 7118 CTTTGACAGGTGTACCACCCCAGTCAAATTCCCCACCTGCTGCTGTCACCAGAGCGGGTC 7177 Query 126 -CGGCCCGCGAAGGAC-----CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT--TCCG 177 ||||| || | | | ||| | |||||| || ||||| | | | Sbjct 7178 GCGGCCGGCACATGCCAGCCGCTTGGCACCAGAA-----GCG----AGACCCCTCCTAGG 7228 Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC 222 ||| || ||||| |||||||||| || ||||||||||||||| Sbjct 7229 GCTCACTGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCAC 7273 >seq12 Length=147836772 Score = 86.0 bits (94), Expect = 2e-14 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTT-ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||| || || | |||||| || | ||| || ||| |||||||||||||||| Sbjct 113326562 CTTAAGAGCATCCTAAATCACTCCCACCATCTACT-GCACTTCATTGAATTTCTTCACTT 113326504 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| | ||||| |||||||||||||||| |||||| Sbjct 113326503 TGACATTTGGGGCACTATGCAGAAATCACATTGCATCAACA 113326463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635162374048