Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq108 116 3e-21 seq12 96.9 3e-15 seq22 93.3 3e-14 >seq108 Length=148376 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 54052 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 54111 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | |||||||| | |||||| || ||||| ||||| || Sbjct 54112 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTG 54171 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||||| || ||||| || | ||||||||| Sbjct 54172 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 54211 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 55279 CATGAAGAGATCAGGGATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCTTT 55338 Query 66400 -GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 55339 CCCCGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 55397 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 55398 AGATGGCAAA--AGCCC 55412 >seq12 Length=147836772 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| |||||| Sbjct 20190855 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAT 20190796 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 20190795 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 20190753 >seq22 Length=110987800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 97727383 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 97727442 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| | || Sbjct 97727443 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGG 97727502 Query 61376 A 61376 | Sbjct 97727503 A 97727503 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 97726569 GAGAACCCGCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 97726628 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 97726629 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 97726666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556850826640