Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq36306 138 2e-30 seq2291 89.7 8e-16 seq57390 87.8 3e-15 seq56202 86.0 9e-15 >seq36306 Length=14468 Score = 138 bits (152), Expect = 2e-30 Identities = 163/217 (75%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| |||||||||| | ||| ||||||||| ||||| ||| |||||| |||||| | Sbjct 7668 GTACAACGGGCAGGGACTTCATCACCGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 7611 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || ||||||||| | ||||||||||||| |||| | || Sbjct 7610 CTTGTTCATGGGGAAGAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCATTGGGTT 7551 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| |||| ||| ||| | || | ||| |||||||||||| |||||| Sbjct 7550 ATCCGCGCCTGCTGGCGGAGGGTAGGCACAAGCTGAGCCAGTCAGTGTAGCGCACGTGCG 7491 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||| | |||||||||||||||||||||||||||||| Sbjct 7490 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 7454 >seq2291 Length=31075 Score = 89.7 bits (98), Expect = 8e-16 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| || ||||| |||| ||| Sbjct 13242 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCAATTACTGGGAA-TTC 13185 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| | | || ||||||||| | ||||||||||||| Sbjct 13184 CTCGTTCACGGGGAAGAATTGCAATCCCCAATCCCCATCACGA 13142 >seq57390 Length=212 Score = 87.8 bits (96), Expect = 3e-15 Identities = 85/104 (82%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| || |||| | |||| ||| Sbjct 106 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCTGCACTTATTGGGAA-TTC 163 Query 61 CTCGTT-GAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| | || || ||||||||| | ||||||||||||| Sbjct 164 CTCGTTCGCAG-GGAAGAATTGCAATCCCCGATCCCCATCACGA 206 >seq56202 Length=70868 Score = 86.0 bits (94), Expect = 9e-15 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||| | ||||||||| | |||||||||||||||||||||||||||||| |||| Sbjct 29818 CAGTGTAGCACATGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 29760 Query 222 AACTTCCGTGGC 233 | ||| ||||| Sbjct 29759 ATCTTGGGTGGC 29748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751533891130