Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22824 98.7 2e-18 seq48472 87.8 3e-15 seq18591 77.0 6e-12 >seq22824 Length=50019 Score = 98.7 bits (108), Expect = 2e-18 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || || ||| | | | |||||||||| ||||||||||||| Sbjct 28951 ATGCTCTTAGCTGAGTGTCCCACGGGGCCCGAAGCATTTACTTTGAGAAAATTAGAGTGT 28892 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| | | |||| ||| |||||||| ||||| ||| | ||||| Sbjct 28891 TCAAAGCAGGCCGGCCACCGGCATACTGCAGCTAGGAATAATGGAATAAGAC-TCCGGTT 28833 Query 157 CTATTTTGTTGGTTT 171 ||||||||||||||| Sbjct 28832 CTATTTTGTTGGTTT 28818 >seq48472 Length=8899 Score = 87.8 bits (96), Expect = 3e-15 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAA 137 ||||| |||||||||||||||||||||||| |||| | |||| ||| ||||||| Sbjct 1511 TTTGAGAAAATTAGAGTGTTCAAAGCAGGCTGGCTGCTGGCATACTGCAGCTAGGAATAA 1570 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTG 167 | ||||||||| | |||||||||||||||| Sbjct 1571 TGGAATAGGAC-TCCGGTTCTATTTTGTTG 1599 >seq18591 Length=43347 Score = 77.0 bits (84), Expect = 6e-12 Identities = 124/176 (70%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||| ||||| | || ||||||||||||||||| | | | | |||||||| ||||| Sbjct 40464 GAACAGGAC-TCCGATTCTATTTTGTTGGTTTTCGGAAATGGGGCTATGATTAAGAGGGA 40522 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | ||||| | |||| || |||||| ||||||||||| | |||| | Sbjct 40523 CCGCTGGGGGCATTTCTATTGTGCTGCTAGAGGTCAAATTCTTGGACCGGTGCAAGATGA 40582 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||| || ||| | || ||||| |||||||||||||||| ||| |||||| || Sbjct 40583 CCTAGAGCAAAAACATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTCAG 40637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914614436736