Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq56202 237 3e-60 seq16521 102 1e-19 seq36306 89.7 8e-16 seq44397 86.0 1e-14 >seq56202 Length=70868 Score = 237 bits (262), Expect = 3e-60 Identities = 203/246 (83%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| ||| Sbjct 29818 CAGTGTAGCACATGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 29760 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT--AGTC 134 | ||| | ||||| | |||| | |||||||||||||| | || ||| || Sbjct 29759 ATCTTGGGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGATGCCGACCGCTCAGGG 29701 Query 135 GATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | || | ||| |||||| | | |||||||||||||||||||||||||||||||||| Sbjct 29700 GTTGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 29641 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| Sbjct 29640 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCATGGAATCGAGAAAGAGCTCTCAA 29581 Query 253 TCTGTC 258 |||||| Sbjct 29580 TCTGTC 29575 >seq16521 Length=42239 Score = 102 bits (112), Expect = 1e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| | Sbjct 3168 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCT 3227 Query 250 CAATCTGTC 258 ||||||||| Sbjct 3228 CAATCTGTC 3236 >seq36306 Length=14468 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| Sbjct 7510 GTCAGTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 7454 >seq44397 Length=67672 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/90 (81%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| ||||||||||||||||||||||||||| | || ||||| |||| ||||||| Sbjct 48617 TTATTGGAATTAACCAGACAAATCACTCCACC----ACGAGTGGCCAGGCACTACCACCC 48562 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| |||||||||| | ||||||| Sbjct 48561 ATGGAACTGAGAAAGAGCTCTTGATCTGTC 48532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796306122942