Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq35859 297 3e-78 seq54231 286 6e-75 seq51312 223 6e-56 seq5732 131 3e-28 seq5768 104 4e-20 seq9860 89.7 9e-16 seq56 77.0 6e-12 seq63973 73.4 7e-11 >seq35859 Length=5608 Score = 297 bits (328), Expect = 3e-78 Identities = 246/299 (82%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||| ||||||||| Sbjct 2213 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTTACCTGTCTC 2154 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 2153 ATGATGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2094 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||| |||| |||||||||||||||||| |||||||| ||| Sbjct 2093 AATTCTGCTTCACAATGATAGGTGGAGCTGACATCGAAGGATCAAAAGGCAACGTCACTA 2034 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| || Sbjct 2033 TGAACTCTTGGCTGCCACAAGCCAGTTAGCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1974 Query 240 TCAAATTTCGAGGGACTA-----AAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | | | |||||| | ||||| |||||| ||| ||||||| Sbjct 1973 TAAAACCTAAAAAGCCAAACCAGAAGGATTGTGAGGCCCTGCTTTCACGGTCTGTATTC 1915 >seq54231 Length=45989 Score = 286 bits (316), Expect = 6e-75 Identities = 221/263 (84%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 30322 TCATCAGTAGGATAAAACTAACCTGTCTCATGATGGTCTAAACCCCGCTCACGTTCCTTA 30381 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| Sbjct 30382 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCAGCTTCACAATGATAGGAAGAGCCAG 30441 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||| | ||||||||||| |||| |||||||||||||||||| Sbjct 30442 TATCAAAGGATCAAAAAGCGATATCGCTATGAACATATGGCCGCCACAAGCCAGTTATCC 30501 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||| || | ||| | | | |||||||| ||| Sbjct 30502 CTGTGGTAACTTTTCTGATACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGG 30561 Query 271 CCACACTTTCATGGTTTGTATTC 293 || |||||||||||| ||||||| Sbjct 30562 CCCCACTTTCATGGTCTGTATTC 30584 >seq51312 Length=17611 Score = 223 bits (246), Expect = 6e-56 Identities = 143/156 (92%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 16340 ATCAGTAGGGTAAAACTAACCTGTCTCACAATGGTCTAAACCCAGCTCACGTTCCCTATT 16399 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||||| |||| |||||||||||| |||||||||||||| |||| Sbjct 16400 AGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGACA 16459 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 ||||||||||||||||| | |||||||||||||||| Sbjct 16460 TCGAAGGATCAAAAAGCGATGTCGCTATGAACGCTT 16495 >seq5732 Length=178446 Score = 131 bits (144), Expect = 3e-28 Identities = 190/264 (72%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| ||||||||| | ||||||| |||||| |||| | Sbjct 20466 TCATCAGGAGGATAAAACTAACTTGTCTCATGGCAGTCTAAATCCAGCTTGTGTTCATTT 20407 Query 91 TT-AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || | ||||| ||| | ||||| ||| |||||| | || | ||| ||||| |||| Sbjct 20406 TTTAATGGGTAAACCAGCCAACACTTGGTGAATTCGGTTTTGTGGTGACAGGAAAAGCCA 20347 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||| | || | ||| | |||| | ||| |||| || | ||| || Sbjct 20346 ACATCAAAGGGTTGAA--GTAACTTTGCTAATAG---TTGACTGCTGCAGGGTGGTTTTC 20292 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||||||||||||||||| || |||| || | ||| | || | | |||| || || Sbjct 20291 TCTGTGGTAACTTTTCTGACATCTCTTGCTTGAAACCTAGAAAGTCAGAAGG-TCCTGAG 20233 Query 270 GCCACACTTTCATGGTTTGTATTC 293 |||||||| |||||| ||||||| Sbjct 20232 GCCACACTAGCATGGTCTGTATTC 20209 >seq5768 Length=53676 Score = 104 bits (114), Expect = 4e-20 Identities = 81/94 (86%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGA-CGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||| ||| ||||||| ||||| |||||| ||||| |||||| Sbjct 11378 TCATCAGTAGGGTAAAACTAATCTGCCTCATGATTGGTCT-AACCCAACTCACATTCCCT 11436 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 ||||||||||||||| |||| |||| ||||| Sbjct 11437 ATTAGTGGGTGAACAGTCCAGTGCTTGGTGAATT 11470 >seq9860 Length=14355 Score = 89.7 bits (98), Expect = 9e-16 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||| |||||||| || | |||||||||||||| ||| |||| Sbjct 8338 TCATCAATAGGGTAAAACTAAGCTGTCTCACAACAGCCTAAACCCAGCTCATGTTTCCTA 8397 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 8398 TTAGTGGGGGAA 8409 >seq56 Length=72541 Score = 77.0 bits (84), Expect = 6e-12 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA 72 |||||||||||||||||||||||||||||||||||||||||| Sbjct 3057 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA 3098 >seq63973 Length=32974 Score = 73.4 bits (80), Expect = 7e-11 Identities = 48/52 (92%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCAC 82 ||||||||| ||||||||| ||||||||||||| ||||| |||||||||||| Sbjct 30672 TCATCAGTAAGGTAAAACTCACCTGTCTCATGATGGTCT-AACCCAGCTCAC 30622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853853337792