Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq36306 156 8e-36 seq57390 95.1 2e-17 seq2291 95.1 2e-17 seq56202 91.5 3e-16 >seq36306 Length=14468 Score = 156 bits (172), Expect = 8e-36 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| | Sbjct 7454 CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACACTGACTGG 7513 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 || | || | | ||| ||| | ||| || ||| | | || | | ||||| Sbjct 7514 CTCAGCTTGTGCCTACCCTCCGCCAGCAGGCGCGGATAACCCAATGAACCCCATTCGTGA 7573 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||| | | ||||||||| || | | | ||| |||||| || |||||| ||| |||| Sbjct 7574 TGGGGATCGGGGATTGCAATTCTTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCA 7633 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| |||| |||| | |||||||||| ||||| Sbjct 7634 TAAGCTCGCGGTGATGAAGTCCCTGCCCGTTGTA 7667 >seq57390 Length=212 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTC-AACGAGGAATGCCTAGTAAGCG 287 ||||| ||||||| | | ||||||||| || | || | |||||||||| || | |||| | Sbjct 206 TCGTGATGGGGATCGGGGATTGCAATTCTTCC-CTGCGAACGAGGAATTCCCAATAAGTG 148 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 147 CAGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 107 >seq2291 Length=31075 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | ||||||||| || | | | |||||||||| || ||||| || Sbjct 13142 TCGTGATGGGGATTGGGGATTGCAATTCTTCCCCGTGAACGAGGAATTCCCAGTAATTGC 13201 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| | ||||||||| |||||||||||||||| Sbjct 13202 AGGTCATAAGCTCACGTTGATTAAGTCCCTGCCCTTTGTA 13241 >seq56202 Length=70868 Score = 91.5 bits (100), Expect = 3e-16 Identities = 82/99 (83%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 29722 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 29779 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||| | ||||||||| | ||||||||| Sbjct 29780 ATGCCCTTAGATGTCCGGGGCCGCACATGTGCTACACTG 29818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946593962496