Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq54231 239 1e-60 seq35859 226 9e-57 seq3619 217 5e-54 seq37081 201 4e-49 seq54274 179 1e-42 seq42324 147 7e-33 seq4775 147 7e-33 seq8520 95.1 4e-17 seq48367 84.2 7e-14 >seq54231 Length=45989 Score = 239 bits (264), Expect = 1e-60 Identities = 171/196 (87%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||||| ||| ||||| | |||||| |||||||||| Sbjct 30897 CTCCCACTTATTCTACACCTCTCGTGTCTCCTCACAGCCGCAGACTAG--TCAAGCTCAA 30954 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| |||||||| |||||||||||| ||||||| || | Sbjct 30955 CAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCTGTTCCCTTGGCTTTGGTTTCACTGG 31014 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| || ||||||||||||| |||| |||||||||||||| |||||||||||||| Sbjct 31015 ATAGTAGGTACAGACAGTGGGAATCGCGTTCATCCATTCATGCGCATCACTAATTAGATG 31074 Query 417 ACGAGGCATTTGGCTA 432 | |||||||||||||| Sbjct 31075 ATGAGGCATTTGGCTA 31090 >seq35859 Length=5608 Score = 226 bits (250), Expect = 9e-57 Identities = 338/485 (70%), Gaps = 71/485 (15%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| ||||||| |||| |||| | ||||||||||||||||||||| Sbjct 1881 CTTCTGCTCTGCGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCGTTATG 1822 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT-CATCAACCCGGAT 125 ||| |||| ||| | | ||||| |||||||||||||| | ||| | | | | || | Sbjct 1821 CTTTGACAGGTGTACTGTCCCAGTCAAACTCCCCACCTACCGCTGTTCCTGGAGCGGGTT 1762 Query 126 CGGCCCG---CGAA---GGACCTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171 ||||| || | || ||| | |||||| | | |||| | | Sbjct 1761 GCGCCCGGCGCGCACCAGGCACTTGGCACCAGAAGAAAGAGCCCTCCTCGGGGCTTGC-- 1704 Query 172 GTTCC--GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227 |||| || ||| || ||||| |||||||||| || |||||||||||||||| || Sbjct 1703 -TTCCCCGCCTCACTGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACTGACGGC 1645 Query 228 -----------------------------CCG----------AAACGGC-TCCCACTTAT 247 ||| | |||| ||||||||| Sbjct 1644 CGGGACGCCGGCAGGCAGGTCGCCCCACACCGCTGAGCGCACACCCGGCCTCCCACTTAC 1585 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 || |||||||||| || |||||| | ||||||||||| ||||| ||| ||||||| Sbjct 1584 TCCACACCTCTCATCTC--TTCACAGCACCAGACTAGAGTCAGGCTCAGCAGAGTCTTCT 1527 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||| ||| ||||| || |||||||||||||||| |||||||| ||| Sbjct 1526 TTCCCCGCTGACTCCACCAAGGCC-------TGGCTGTGGTTTCGCTGGATAGTAGGTAG 1474 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||||||||||||||| |||||||||||| ||||||||||||| || |||| |||| Sbjct 1473 GGACAGTGGGAATCTCGTTCATCCATTCATGCATGTCACTAATTAGAAGATGAGGTATTT 1414 Query 428 GGCTA 432 ||||| Sbjct 1413 GGCTA 1409 >seq3619 Length=35273 Score = 217 bits (240), Expect = 5e-54 Identities = 330/468 (71%), Gaps = 49/468 (10%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||| | ||||| ||||||| |||| |||| | |||||||||||||| ||| Sbjct 13037 GATCTTCTGCACCGCAGGATGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTT 13096 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGG 123 ||||||| |||| || | ||||||| |||||||||||||||||| ||||| || | Sbjct 13097 ATGGTTTGACAGCCGTACTGCCCCAGTCAAACTCCCCACCTGACACTGTCACCA-----G 13151 Query 124 ATCGGCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTC- 175 | | || | | || | ||| | ||||| | | || | ||| | | Sbjct 13152 AGCAGCTCATGCTGGGCACTTGGCATCAGAAGTGAGAGCCCTTTGGGGCTTACCCCTCCA 13211 Query 176 ----CGCTTCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTTGC---- 226 | | ||| || ||||| |||||| ||| || |||||||||| || Sbjct 13212 CATACACCTCACTGGGTAAGTGGAAAAAATGATCAGCA-----GTATTTCACTGGCAACT 13266 Query 227 --------GCC-GA-------AAC-----GGCTCC-CACTTATTCTACACCTCTCAAGTC 264 ||| || ||| |||| | || |||||||||| |||| | ||| Sbjct 13267 GGACTATGGCCTGAGCTGCACAACCGTGGGGCTTCTCATTTATTCTACAGCTCTGATGTC 13326 Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||||| ||| |||||| | ||||||||||||| |||||||| |||| |||| | Sbjct 13327 TCTTCACAGCACTGGATTAGAGTGATGCTCAACAGGGTCGTCTTTCCCAGCTGGTTCCAC 13386 Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 |||| | |||| ||||||||||||||| || || |||| ||||||||||||||||||| Sbjct 13387 CAAGTCTGTTCTCTTGGCTGTGGTTTCACTGGACAGTAAGTAGGGACAGTGGGAATCTCA 13446 Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 || |||||||||||| | ||||||| | ||||| |||||||||||||| Sbjct 13447 TTCATCCATTCATGCACATCACTAACTGGATGATGAGGCATTTGGCTA 13494 Score = 217 bits (240), Expect = 5e-54 Identities = 330/468 (71%), Gaps = 49/468 (10%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||| | ||||| ||||||| |||| |||| | |||||||||||||| ||| Sbjct 26754 GATCTTCTGCACCGCAGGATGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTT 26813 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGG 123 ||||||| |||| || | ||||||| |||||||||||||||||| ||||| || | Sbjct 26814 ATGGTTTGACAGCCGTACTGCCCCAGTCAAACTCCCCACCTGACACTGTCACCA-----G 26868 Query 124 ATCGGCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTC- 175 | | || | | || | ||| | ||||| | | || | ||| | | Sbjct 26869 AGCAGCTCATGCTGGGCACTTGGCATCAGAAGTGAGAGCCCTTTGGGGCTTACCCCTCCA 26928 Query 176 ----CGCTTCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTTGC---- 226 | | ||| || ||||| |||||| ||| || |||||||||| || Sbjct 26929 CATACACCTCACTGGGTAAGTGGAAAAAATGATCAGCA-----GTATTTCACTGGCAACT 26983 Query 227 --------GCC-GA-------AAC-----GGCTCC-CACTTATTCTACACCTCTCAAGTC 264 ||| || ||| |||| | || |||||||||| |||| | ||| Sbjct 26984 GGACTATGGCCTGAGCTGCACAACCGTGGGGCTTCTCATTTATTCTACAGCTCTGATGTC 27043 Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||||| ||| |||||| | ||||||||||||| |||||||| |||| |||| | Sbjct 27044 TCTTCACAGCACTGGATTAGAGTGATGCTCAACAGGGTCGTCTTTCCCAGCTGGTTCCAC 27103 Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 |||| | |||| ||||||||||||||| || || |||| ||||||||||||||||||| Sbjct 27104 CAAGTCTGTTCTCTTGGCTGTGGTTTCACTGGACAGTAAGTAGGGACAGTGGGAATCTCA 27163 Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 || |||||||||||| | ||||||| | ||||| |||||||||||||| Sbjct 27164 TTCATCCATTCATGCACATCACTAACTGGATGATGAGGCATTTGGCTA 27211 >seq37081 Length=36023 Score = 201 bits (222), Expect = 4e-49 Identities = 163/196 (83%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||| |||||||||||| | | | |||||| | |||||||||| |||||| Sbjct 14052 CTTCCACTCATTCTACACCTCGTATGCCTCTTCACAGCACCAAACTAGAGTCATGCTCAA 13993 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| ||||||||| | ||||| ||||||||||| |||||||||| | Sbjct 13992 GAGGGTCTTCTTTCCCTGCTGATTCCAC-AAGCCTATTCCCTTGGCTATGGTTTCGCTGG 13934 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | | ||| | |||||||||||||||| ||| |||||||||||| | |||||||||||||| Sbjct 13933 ACAATAGGTGGGGACAGTGGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATG 13874 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||| ||| Sbjct 13873 ACAAGGCATTTGACTA 13858 >seq54274 Length=26184 Score = 179 bits (198), Expect = 1e-42 Identities = 155/196 (79%), Gaps = 21/196 (11%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||| || | | ||||||||||||| |||| Sbjct 17154 CTCCCACTTATTCTACACCTCTCATGTC--TTCGCAGCGCCAGACTAGAGTCAAGGTCAA 17097 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||| |||||| ||||||||| |||||| |||||||||||||||| |||||| | Sbjct 17096 CAGGGTCTTCCTTCCCCACTGATTCCGTCAAGCCTGTTCCCTTGGCTGTGGCTTCGCTGG 17037 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || ||||| || || ||||| || ||||||||||||||||| Sbjct 17036 AT-------------------CATCTCATTCATGCATTCGTGTGCGTCACTAATTAGATG 16996 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||||||| Sbjct 16995 ACAAGGCATTTGGCTA 16980 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | |||||| | ||||||||| | Sbjct 17425 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAG-ATGCCTGCGTTAGG 17367 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | | ||| ||||||||| ||||||||||||||| || |||| Sbjct 17366 CTTTGATGGGTGTACCGCCCCAGGCAAACTCCCCACCTGCCACTGTC 17320 >seq42324 Length=466 Score = 147 bits (162), Expect = 7e-33 Identities = 92/99 (93%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct 229 TTAAGAGAGTCATAGTTACCTCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTTTG 170 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| ||||||||||||||| ||||||||| Sbjct 169 ACATTCAGAGCACGGGGCAGAAATCACATCGCGTCAACA 131 >seq4775 Length=1166 Score = 147 bits (162), Expect = 7e-33 Identities = 92/99 (93%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| Sbjct 910 CTTAAGAGAGTTATAGTTTCCCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 969 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||| ||||||||||||||| |||||||| Sbjct 970 GACATTCAGAGCACGGGGCAGAAATCACATCGCGTCAAC 1008 >seq8520 Length=55628 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| |||| || |||| |||| | |||||||| |||||| ||| Sbjct 21915 CTTCTGCTCTGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGATACCTGCATTACA 21974 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| | ||||||| ||||||||||||||| || |||| Sbjct 21975 CTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCACTGTC 22021 >seq48367 Length=149602 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| ||||||| |||| |||| |||||||| |||||| ||| ||||| || | ||| Sbjct 104621 GGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGAGACCTGCCTTACGGTTTGACGGGTGT 104680 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || ||||||||||| |||||||| ||| |||| Sbjct 104681 ACCACCCCAGCCAAAATCCCCACCCGACGCTGTC 104714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634153766336