Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30096 129 5e-25 seq13082 96.9 3e-15 seq24567 91.5 1e-13 >seq30096 Length=29002 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 17514 GGTATACTCCACTATTTCCGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 17573 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 17574 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCTGTCTG 17633 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||| || ||||| |||| || ||||| || | ||||||||| Sbjct 17634 GGATTCGATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 17673 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 19524 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 19583 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 19584 TCCTGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 19642 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 19643 AGATGGCAAA--AGCCC 19657 >seq13082 Length=16488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| ||||||||||| |||||||||||||||||||| ||| | || ||||| |||||| Sbjct 15767 GAGGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCGGAAATGTAC 15708 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 15707 AGTCTTCTTATTGACACCTACAT 15685 >seq24567 Length=19836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 14387 CAGGAGGTGCAGATTCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 14328 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 14327 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 14285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397257984176480