Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq37130 158 2e-36 seq21479 105 1e-20 seq33283 100 5e-19 seq9180 82.4 1e-13 seq15412 77.0 6e-12 >seq37130 Length=108703 Score = 158 bits (174), Expect = 2e-36 Identities = 132/161 (82%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||| |||||||| |||||||||||||| | ||||||||||||||| ||| | Sbjct 93931 ATGATAGGAAAAGCCGACA---AAGGATCAAAAAGCGATGTCGCTATGAACGCTCGGCCG 93987 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||||||||||||||||||||||||||||| |||||| || | ||| | | Sbjct 93988 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAG 94047 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||||||| ||||| | |||||| ||| |||||||| Sbjct 94048 CCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 94088 >seq21479 Length=195750 Score = 105 bits (116), Expect = 1e-20 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||| || |||||||| || ||||||| | | |||||||||||||||| |||| | Sbjct 84319 TCGTCAGGAGAGTAAAACTCACTTGTCTCACGGCAGTCTAAACCCAGCTCATGTTCATTG 84378 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT-ATGATAGGAAGAGCCG 149 ||| ||||||| | ||||| ||| |||||||| || | ||| | ||| ||| Sbjct 84379 TTAATGGGTGATCCGACCAACACTTGGAGAATTCTGTTTTTTTGGTGACAAGAAAGGCCA 84438 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| || | | ||| ||| | ||| || ||||| |||| || | ||| || Sbjct 84439 ACATCAAAAGGT--TGAAGTAACTTTGCT---AATGCTTGACTGCTGCAGGGTGGTTTTC 84493 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||| ||||||||| || |||| || | ||| Sbjct 84494 TCTGTGGTCACTTTTCTGACATCTCTTGCTTAAAA 84528 >seq33283 Length=4379 Score = 100 bits (110), Expect = 5e-19 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 || || |||||| ||| ||| ||||| ||| ||| ||||| || |||| |||| Sbjct 3536 TCTCTGTTAGTGTGTGGACAGTCCAATGCTCGGTGAACTCTGCCTCACGGCGATAAGAAG 3595 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||| | | ||||||||| | ||| | |||| |||||| ||||| |||||||||||||| Sbjct 3596 AGCAGGCGCCGAAGGATCGAGAAGTGATGTCGTTATGAATGCTTGACTGCCACAAGCCAG 3655 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTC 234 || | | |||| |||||||| |||||| Sbjct 3656 CTAGAGCCGGGGTACCTTTTCTGACACCTC 3685 >seq9180 Length=2640 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 2489 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2430 Query 60 ATGACGGTCTAAACCCAGCT 79 | |||||||||| ||||||| Sbjct 2429 ACGACGGTCTAATCCCAGCT 2410 >seq15412 Length=19105 Score = 77.0 bits (84), Expect = 6e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || || |||||||||||||||| | ||||| || || | |||||||||||| | ||||| Sbjct 5839 TCTTCGGTAGGGTAAAACTAACTTATCTCACAACAGTTTGAACCCAGCTCACATCCCCTA 5898 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 5899 TTAGTGGGGGAA 5910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853829388960