Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4740 477 3e-132 seq38932 167 8e-39 seq24137 165 3e-38 seq23217 143 9e-32 seq33272 77.0 1e-11 >seq4740 Length=7483 Score = 477 bits (528), Expect = 3e-132 Identities = 284/297 (96%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 53 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 112 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 113 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 172 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 173 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 232 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 292 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 293 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 349 >seq38932 Length=23560 Score = 167 bits (184), Expect = 8e-39 Identities = 307/448 (69%), Gaps = 39/448 (9%) Strand=Plus/Minus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||||| | || |||||| ||||| |||| |||||||| ||||| ||| Sbjct 12042 GATCTTCTGCTCCATGGGTTGTTTCTGCTCTCCCTGAGGTTGCCTTAGGATACCTGTGTT 11983 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA-TCAACCCG 122 ||||||| | | | | | ||||||| |||| ||||||||||||| ||||| | | | | Sbjct 11982 ATGGTTTGCCTGGTCTACTGCCCCAGTCAAAATCCCCACCTGACATTGTCAGTGGAGCAG 11923 Query 123 GATCGGCCCGCGAAGGACCTTAACGCCAGAAA---ATGGTCGGTGAAGACCAG-TTCCGC 178 | | ||| ||| ||| | |||| | | | | || | || |||| | Sbjct 11922 GTTGTGCC-----AGGCACTTGGCATCAGACATGAAAGCCCTTTGGGGCTCACCTTCCAC 11868 Query 179 T------TCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTTGC----- 226 ||| || ||||| |||||| ||| || | ||||||||| || Sbjct 11867 CCACAGCTCACTGGGTAAGTGGAAAAAATGATCAGTAT-----TATTTCACTGGCAACGT 11813 Query 227 ------GCCGAAAC------GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAA 274 ||| ||| | |||||| |||||||| ||| | ||| |||||| Sbjct 11812 CACCAGGCCACAACCATGGGGCCTCCCATTTATTCTATGTTTCTGATGTCTCTTCACAGT 11753 Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 | ||||||||||| ||||| ||| || |||||||| ||| |||| |||||||| ||| Sbjct 11752 ACCAGACTAGAGTCATGCTCATCAGAGTGGTCTTTCCCTGCTAATTCTGCCAAGCCTGTT 11693 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 | ||||||||||||||| || |||||| |||| |||| |||||||||| || || |||| Sbjct 11692 CTCTTGGCTGTGGTTTCTCTGCATAGTAAATAGAGACAATGGGAATCTCATTCATACATT 11633 Query 395 CATGCGCGTCACTAATTAGATGACGAGG 422 || || | ||| ||||| ||||| |||| Sbjct 11632 CACGCACATCATTAATTGGATGATGAGG 11605 >seq24137 Length=59997 Score = 165 bits (182), Expect = 3e-38 Identities = 154/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||| | || ||| || | | ||||||| ||| | |||| Sbjct 31020 CTCCCACTTATTCTACACCTCTTATGTATCTTCGCAGTGGCAGACTAGACTCATGGTCAA 30961 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 | | | ||||||||| |||||||| ||||||||| || |||||| ||||||||| || | Sbjct 30960 TAAGATTTTCTTTCCCTGCTGATTCAGCCAAGCCCATTTCCTTGGTTGTGGTTTCACTGG 30901 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||| ||||| ||||||| ||| || ||||||| | | || ||| ||| Sbjct 30900 ATAGTATCTAGGAACAGTAGGAATCTGGTTCATTCATTCATACATATGTCTCATTCAATG 30841 Query 417 ACGAGGCATTTGGCTA 432 | ||||||||||||| Sbjct 30840 ATAAGGCATTTGGCTA 30825 >seq23217 Length=10492 Score = 143 bits (158), Expect = 9e-32 Identities = 91/99 (92%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 4640 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCCTTTT 4699 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||| ||||||||||||||||||| ||||| |||||||| Sbjct 4700 GACGTTCAGAGCACTGGGCAGAACCCACATCGCGTCAAC 4738 >seq33272 Length=8672 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/135 (73%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||| || || |||||||| | |||| | |||| | | | |||||||||||||||| Sbjct 4029 GGCTTCCTCTCATTCTACATCCCTCATATTTCTTCATAGTGCCAGACTAGAGTCAAGCTC 3970 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC--TTGGCTGTGGTTTCG 352 || |||| | ||| | ||| | ||||||||| ||||| ||||||| |||| Sbjct 3969 --CACCATCTTGCTCCCCTACAGATCCTGCCAAGCCCATTCCCATATGGCTGTAGTTTTC 3912 Query 353 CTAGATAGTAGATAG 367 ||| ||||||||||| Sbjct 3911 CTAAATAGTAGATAG 3897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634107931680