Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq47146 104 2e-17 seq3258 98.7 8e-16 seq30157 93.3 3e-14 >seq47146 Length=33513 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| || | || || ||||||||||| ||||| |||| Sbjct 15081 TGGCACGTTTTAGTCAGGAGGTGCAGGTCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 15140 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| ||||||||||| | ||||| || || ||||||| Sbjct 15141 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCCTGCTCATAGACACCTACATCA 15197 >seq3258 Length=22478 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 8895 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 8836 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 8835 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8777 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 8776 AGATGGCAAA--AGCCC 8762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | ||||| |||||||| |||||||| || | || || |||||||| Sbjct 12832 TCATACGGTCCTTGCTCCTCGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 12773 Query 65741 GTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| || | || ||| | | ||||| || || | || ||||| || Sbjct 12772 GTCTCAAAAATTTGTTGGTTCAAGCGC-TGGGCCTCGGGACTTTC-AAAGGGATACCTCA 12715 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 |||||| |||| || ||||| || || || ||||| || ||||||||||| || | Sbjct 12714 TCAGGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 12655 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 12654 TGGAGCGT 12647 >seq30157 Length=13407 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||| | | || || ||||||||||| |||||||||||||||||||| ||| Sbjct 12531 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 12472 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || || || ||||||||| |||| || ||||| ||||| Sbjct 12471 ATACATTCAGAAATGTACAGTCTTCTTATTGATACTTACAT 12431 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||| | | || || ||||||||||| |||||||||||||||||||| ||| Sbjct 12731 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 12672 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || || || ||||||||| |||| || ||||| ||||| Sbjct 12671 ATACATTCAGAAATGTACAGTCTTCTTATTGATACTTACAT 12631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397244402632400