Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalacrocorax_20carbo_20[refseq_20GCF_5F000708925.1_202014-06-17] 64,312 sequences; 1,138,967,842 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq51982 120 6e-25 >seq51982 Length=3548 Score = 120 bits (132), Expect = 6e-25 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGG 132 |||||||||| |||||| |||||||||||||||||| ||| | | |||| ||| || Sbjct 347 TTTACTTTGAGAAAATTGGAGTGTTCAAAGCAGGCCGGTTGTTGGCATACTGCAGCTAGG 288 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 || ||| ||||||||| | | | ||| | |||||||||| |||| | | | ||||| Sbjct 287 AACAATGGAATAGGAC-TCCAGCTCTGTCTTGTTGGTTTTCAGGAACAGGGCCAAGATTA 229 Query 193 ATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 | ||||| || |||| | ||||| || ||||||||||||| |||| | Sbjct 228 AGAGGGACAGCAAGGGGACGAATGTATTGTGCTGCTAGAGGTGAAATTCCTGGACTGGCA 169 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||| ||| | |||||| || ||||| |||||||||||||||| |||| ||| Sbjct 168 CAAGATGGCCTAGAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAGAAG 110 Query 312 TTAG 315 | || Sbjct 109 TCAG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914611416576