Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalacrocorax_20carbo_20[refseq_20GCF_5F000708925.1_202014-06-17] 64,312 sequences; 1,138,967,842 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq61042 452 1e-124 seq5556 179 1e-42 seq28580 170 6e-40 seq27030 138 4e-30 seq34063 82.4 2e-13 >seq61042 Length=470 Score = 452 bits (500), Expect = 1e-124 Identities = 273/288 (95%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || |||||||||||| ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 26 ATACTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTT 85 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct 86 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAGAGTAGGT 145 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 146 AGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 205 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 206 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTC 265 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 266 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 313 >seq5556 Length=18098 Score = 179 bits (198), Expect = 1e-42 Identities = 157/196 (80%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| ||||||||||||||| |||| |||||| | |||||| || |||||| Sbjct 5402 CTCCCATTTATTCTACACCTCTGAAGTATCTTCACAGCACCAGACTAGGGTTGTGCTCAA 5343 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| |||||| |||| ||||||||||||||| || | Sbjct 5342 CAGGGTCTTCTTTCCCTGCTGATTCTTTCAAGCCTGTTCTCTTGGCTGTGGTTTCACTGG 5283 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| |||||||||||| ||| ||||||||||| ||||||||| |||| Sbjct 5282 CTAGTAAGTAGGGACAGTGG-------GTTCCTCCATTCATGCATATCACTAATTGGATG 5230 Query 417 ACGAGGCATTTGGCTA 432 | |||||||||||||| Sbjct 5229 ATGAGGCATTTGGCTA 5214 >seq28580 Length=77350 Score = 170 bits (188), Expect = 6e-40 Identities = 154/193 (80%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||| |||| | | ||| |||||| | |||||||||| || |||||| Sbjct 75777 CCACTTATTCTATACCTTTTATGTCTCTTCACAGCACCAAACTAGAGTCATGCCCAACAG 75718 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||| ||| |||||||| ||| || ||| |||||||||||||||| || || Sbjct 75717 GGTCTT---TCCTTGCTGATTCTACCACACCTGTTTCCTTGGCTGTGGTTTCACTGGAGG 75661 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||| |||||||| | ||||||| ||| ||||||||||| | |||||||||||||||| Sbjct 75660 GTAGGTAGGGACAATAGGAATCTTGTTCATCCATTCATGTACATCACTAATTAGATGACA 75601 Query 420 AGGCATTTGGCTA 432 |||||||||| || Sbjct 75600 AGGCATTTGGTTA 75588 >seq27030 Length=51462 Score = 138 bits (152), Expect = 4e-30 Identities = 121/149 (81%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||| ||||||||||||| ||||||||| || |||| || ||||| Sbjct 16335 GAGTCAAGCTCAACAAGGTCTTCTTTCCCTGCTGATTCCACCCAGCCTCTTTGACTGGCT 16394 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||| || |||||||| |||||||||| |||||||| || | |||||| || | Sbjct 16395 GTGGTTTCACTGGATAGTAGGTAGGGACAGTAGGAATCTCATTCTTTGGTTCATGTGCAT 16454 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 ||| || ||||| ||||||||||||| Sbjct 16455 CAC--AT--CATGACAAGGCATTTGGCTA 16479 >seq34063 Length=12216 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 49 TAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||||||||||| |||||| ||| |||| ||| ||||||||| ||||||||||||||| || Sbjct 11512 TAGGACACCTGTGTTATGCTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCA 11453 Query 109 ATGTC 113 |||| Sbjct 11452 CTGTC 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634148370176